| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 4519284 = | 27 (1.130) | 3 (0.130) | 3/268 | 3.0 | 11.1% | intergenic (+78/+36) | insB1/yjhU | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element |
| ? | NC_000913_3_hsa_tpiA | 4519308 = | 23 (1.030) | intergenic (+102/+12) | insB1/yjhU | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/putative DNA‑binding transcriptional regulator; KpLE2 phage‑like element | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTG‑CCGTTCCTTCATCAACAATCAGGTCCGTGACATATCCTCCCAGCAGGGCACCCAACGTTGCGTCATAGCCTCTTTCCCCACCAGCAAGGAAGATCTTCCGTT > NC_000913_3_hsa_tpiA/4519162‑4519456 | gACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAgttg > 2:227794/1‑149 (MQ=255) aCAAGGTCTTCGGGCATAATCTTTACATGGGAGACTGTCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAACCAATAAAATCCTGCCCCATATCTACATGGGGCAgttgt < 1:287326/149‑1 (MQ=255) aaGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTc > 1:263080/1‑149 (MQ=255) cGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCtttt < 2:159767/149‑1 (MQ=255) gggCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTa < 2:306474/149‑1 (MQ=255) gCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTCgt > 2:192494/1‑149 (MQ=255) aaCATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTc > 2:310585/1‑149 (MQ=255) aaCACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGTTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCAATATCTACATTGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGcc > 2:399601/1‑149 (MQ=255) acacTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTATTGTGGTCATTCACAccccc > 2:310353/1‑148 (MQ=255) ttGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTc > 2:83805/1‑106 (MQ=255) ttGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTc < 1:83805/106‑1 (MQ=255) ttttATTTCATATATTGTGGGTATTGTTCTTATGATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGTGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTG‑CCGTTCCTTCATCAACAATCAg < 2:368321/148‑1 (MQ=255) aTTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAACAACTCTG‑CCGTTCCTTCATCAACAATCAGGTcc < 1:227794/149‑1 (MQ=255) gggTATTGTTCTTATTATCGCGGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTG‑CCGTTCCTTTATCAACAATCAGGTCCGTGACATAtcctcc > 1:199978/1‑149 (MQ=255) tATTGTTCTTATTATCGCCGCTAATCCATAAAATCCTGCCCCATATCTACATGGGTCAGTGGTTCATTGTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTG‑CCGTTCCTTCATCAACAATCAGGTCCATGACATATCCTCCcag > 2:107705/1‑149 (MQ=255) gTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTG‑CCGTTCCTTCATCACCAATCAGGTCCGTGACCTATCATCCcagcaga > 1:394142/1‑148 (MQ=255) ttCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCGAGCAAAAACTCTG‑CCGTTCCTTCATCAACAATCAGGTCCGTGACATATCCTCCCAGGAggg > 1:251747/1‑149 (MQ=255) tCTTATTATCGCAGCGAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTG‑CCGTTCCTTCATCAACAATCAGGTCCGTGACATATCCTCCCAGCAGGGc < 1:160710/149‑1 (MQ=255) ttattaTCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTG‑CCGTTCCTTCATCAACAATCAGGTCCGTGACATATCCTCCCAGCAGGGCAc < 1:211090/149‑1 (MQ=255) tatCGCCGCTAATCAATAAAATCCTGCCCCATATCTCCATGGTGCAGTTGTTCATTCTTTTAGTGTGCTGGTACGGGTGCAAGCAACAA‑GCTGTCCGTTCCTTCATCAACAATCAGGTCCGTGACATATCCTCCCAGCAGGGCACCCaa < 1:414109/149‑1 (MQ=255) gcgaaTCAATAAAATCCAGCCCCATAACTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTG‑CCGTTCCTTCATCAACAATCAGGTCCGTGACATATCCTCCCAGCAGGGCACCCAACGTTGCg < 2:130532/146‑1 (MQ=255) cccATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTG‑CCGt > 1:342842/1‑71 (MQ=255) cccATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTG‑CCGt < 2:342842/71‑1 (MQ=255) ttgttCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTG‑CCGTTCCTTCATCAACAATCAGGTCCGTGACATATCCTCCCAGCAGGGCACCCAACGTTGCGTCATAGCCTCTTTCCCCACCAGCAAGGAAGATCTTCCGtt > 1:384649/1‑149 (MQ=255) | GACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCGACCATGTTTATTTCATACATTGTGGGTATTGTTCTTATTATCGCCGCTAATCAATAAAATCCTGCCCCATATCTACATGGGGCAGTTGTTCATTCTTTTAGTGTGGTAATTCACACGCCAGCAAAAACTCTG‑CCGTTCCTTCATCAACAATCAGGTCCGTGACATATCCTCCCAGCAGGGCACCCAACGTTGCGTCATAGCCTCTTTCCCCACCAGCAAGGAAGATCTTCCGTT > NC_000913_3_hsa_tpiA/4519162‑4519456 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |