New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	4536069 =	21 (0.880)	6 (0.270)	5/268	2.3	21.9%	intergenic (+56/+527)	yjhR/nanS	pseudogene, helicase family; putative frameshift suppressor/9‑O‑acetyl N‑acetylneuraminic acid esterase
	?	NC_000913_3_hsa_tpiA	4536102 =	23 (1.030)					intergenic (+89/+494)	yjhR/nanS	pseudogene, helicase family; putative frameshift suppressor/9‑O‑acetyl N‑acetylneuraminic acid esterase

AACGATACGATACGTCTTTGGTGTACCGTGGTGAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATG  >  NC_000913_3_hsa_tpiA/4535922‑4536215                                                                                                                                                    |                                                                                                                                                   aaCGATACGATACGTCTTTGGTGTACCGTGGTGAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTaa                                                                                                                                                   >  2:323525/1‑149 (MQ=255)    gatacgatacGTCTTTGGTGTACCGTGGTGAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGc                                                                                                                                                >  2:47397/1‑149 (MQ=255)              gatgttcaaagaaattaggccattattatattattgcttgcattttctttcattcctaaaagcacccgccattaatcccaggcgcattatgcaaaggaaaatgattaggtaaacaataagatttataatcaggaAAGGCGACTTTCCGt                                                                                                                                      <  1:163553‑M1/15‑1 (MQ=255)                  ttGGTGTACCGTGGTGAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTa                                                                                                                                  <  2:93705/149‑1 (MQ=255)                                  cattattatattattgcttgcattttctttcattcctaaaagcacccgccattaatcccaggcgcattatgcaaaggaaaatgattaggtaaacaataagatttataatcaggaAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTc                                                                                                                  >  2:163553‑M1/115‑149 (MQ=255)                                     gCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTg                                                                                                               >  1:376762/1‑149 (MQ=255)                                      cGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGa                                                                                                              <  2:38018/149‑1 (MQ=255)                                        tAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGAtt                                                                                                            >  1:106077/1‑149 (MQ=255)                                                   aTAAAGGCAAGATATGGTAGTCTTGATCAATGTCAGCTTTAAATGTGATGAGCTGTTCATTATACAGGAGTAGTAAATGGCATATTTTAGCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTAt                                                                                                 <  2:202344/149‑1 (MQ=255)                                                                     ctaaaagcacccgccattaatcccaggcgcattatgcaaaggaaaatgattaggtaaacaataagatttataatcaggaAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCAtttt                                                                               <  2:325510‑M1/70‑1 (MQ=255)                                                                         tGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCtt                                                                           >  2:22073/1‑149 (MQ=255)                                                                           gcacccgccattaatcccaggcgcattatgcaaaggaaaatgattaggtaaacaataagatttataatcaggaAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTg                                                                         >  1:325510‑M1/74‑149 (MQ=255)                                                                            aTCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAAGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCGTTTTCCTTTgg                                                                        >  2:104283/1‑148 (MQ=255)                                                                                            aaTGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCACAATGCACATGGGAt                                                        >  2:414410/1‑149 (MQ=255)                                                                                               gtgATGAGCCGTTCATGATACAGGCGTAGTAAAGGGCTTATTTTACCAATGTGAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTaa                                                     <  1:388222/149‑1 (MQ=255)                                                                                                tgtggaGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAAGGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAAt                                                    <  2:241374/145‑1 (MQ=255)                                                                                                     aggcGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCgg                                               <  1:212444/146‑1 (MQ=255)                                                                                                                 gatgattaggtaaacaataagatttataatcaggaAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCAtt                                                                                 <  2:132300‑M1/68‑1 (MQ=255)                                                                                                                 gatgattaggtaaacaataagatttataatcaggaAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCAtt                                                                                 >  1:132300‑M1/36‑103 (MQ=255)                                                                                                                  aCAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCTAGTCGCGTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGaa                                  <  1:218589/149‑1 (MQ=255)                                                                                                                  aCAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGaa                                  <  1:64263/149‑1 (MQ=255)                                                                                                                             aaaGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTGTACCTAATCATTGTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAAt                       <  1:200676/149‑1 (MQ=255)                                                                                                                                       ttttACCAATGTTAAGGCGACTTTCCGTTTTATTTCGAGTCGCCTTGCCTAATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTTCATAATGCGCCTGGGATTATTGGCGGGTGCTTTTAGGAATTGAAGAAAATgcaggccaca             >  1:83450/1‑145 (MQ=255)                                                                                                                                        tttACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCaataa            >  1:377816/1‑149 (MQ=255)                                                                                                                                          tACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAataata          <  1:323525/149‑1 (MQ=255)                                                                                                                                               aTGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATCAATGGCGGGTGCTTTTAGGAATGAAAGACAATGCAAGCAAtaatataata     >  2:82984/1‑149 (MQ=255)                                                                                                                                                  ttAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCGTTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATg  <  2:71395/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   AACGATACGATACGTCTTTGGTGTACCGTGGTGAAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATG  >  NC_000913_3_hsa_tpiA/4535922‑4536215

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.