| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 4536069 = | 21 (0.880) | 6 (0.270) | 5/268 | 2.3 | 21.9% | intergenic (+56/+527) | yjhR/nanS | pseudogene, helicase family; putative frameshift suppressor/9‑O‑acetyl N‑acetylneuraminic acid esterase |
| ? | NC_000913_3_hsa_tpiA | 4536102 = | 23 (1.030) | intergenic (+89/+494) | yjhR/nanS | pseudogene, helicase family; putative frameshift suppressor/9‑O‑acetyl N‑acetylneuraminic acid esterase | |||||
AAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAA > NC_000913_3_hsa_tpiA/4535955‑4536240 | cattattatattattgcttgcattttctttcattcctaaaagcacccgccattaatcccaggcgcattatgcaaaggaaaatgattaggtaaacaataagatttataatcaggaAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTc > 2:163553‑M1/115‑149 (MQ=255) gCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTg > 1:376762/1‑149 (MQ=255) cGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGa < 2:38018/149‑1 (MQ=255) tAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGAtt > 1:106077/1‑149 (MQ=255) aTAAAGGCAAGATATGGTAGTCTTGATCAATGTCAGCTTTAAATGTGATGAGCTGTTCATTATACAGGAGTAGTAAATGGCATATTTTAGCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTAt < 2:202344/149‑1 (MQ=255) ctaaaagcacccgccattaatcccaggcgcattatgcaaaggaaaatgattaggtaaacaataagatttataatcaggaAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCAtttt < 2:325510‑M1/70‑1 (MQ=255) tGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCtt > 2:22073/1‑149 (MQ=255) gcacccgccattaatcccaggcgcattatgcaaaggaaaatgattaggtaaacaataagatttataatcaggaAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTg > 1:325510‑M1/74‑149 (MQ=255) aTCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAAGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCGTTTTCCTTTgg > 2:104283/1‑148 (MQ=255) aaTGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCACAATGCACATGGGAt > 2:414410/1‑149 (MQ=255) gtgATGAGCCGTTCATGATACAGGCGTAGTAAAGGGCTTATTTTACCAATGTGAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTaa < 1:388222/149‑1 (MQ=255) tgtggaGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAAGGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAAt < 2:241374/145‑1 (MQ=255) aggcGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCgg < 1:212444/146‑1 (MQ=255) caaaggaaaatgattaggtaaacaataagatttataatcaggaaaggcgactcgcaataaaacggaaagtcgccttTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGc > 1:325510‑M2/77‑149 (MQ=255) aaaatgattaggtaaacaataagatttataatcaggaaaggcgactcgcaataaaacggaaagtcgccttTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAg < 2:325510‑M2/79‑1 (MQ=255) gatgattaggtaaacaataagatttataatcaggaAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCAtt < 2:132300‑M1/68‑1 (MQ=255) gatgattaggtaaacaataagatttataatcaggaAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCAtt > 1:132300‑M1/36‑103 (MQ=255) aatgattaggtaaacaataagatttataatcaggaaaggcgactcgcaataaaacggaaagtcgccttTCCTGATTATAAATCTTATTGTTTACCTAATCatc < 2:132300‑M2/35‑2 (MQ=255) aatgattaggtaaacaataagatttataatcaggaaaggcgactcgcaataaaacggaaagtcgccttTCCTGATTATAAATCTTATTGTTTACCTAATCatc > 1:132300‑M2/69‑102 (MQ=255) aCAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCTAGTCGCGTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGaa < 1:218589/149‑1 (MQ=255) aCAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGaa < 1:64263/149‑1 (MQ=255) aaaGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTGTACCTAATCATTGTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAAt < 1:200676/149‑1 (MQ=255) ttttACCAATGTTAAGGCGACTTTCCGTTTTATTTCGAGTCGCCTTGCCTAATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTTCATAATGCGCCTGGGATTATTGGCGGGTGCTTTTAGGAATTGAAGAAAATgcaggccaca > 1:83450/1‑145 (MQ=255) tttACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCaataa > 1:377816/1‑149 (MQ=255) tACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAataata < 1:323525/149‑1 (MQ=255) aTGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATCAATGGCGGGTGCTTTTAGGAATGAAAGACAATGCAAGCAAtaatataata > 2:82984/1‑149 (MQ=255) ttAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCGTTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATg < 2:71395/149‑1 (MQ=255) gaaaggcgactcgcaataaaacggaaagtcgccttTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATg > 2:163553‑M2/36‑149 (MQ=255) cggTTTTAGTGCGAGTCGTCTTTTCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCttt < 2:195109/147‑1 (MQ=255) ccGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCttt < 2:222091/149‑1 (MQ=255) ccGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCttt < 2:106077/149‑1 (MQ=255) ttttATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGaa > 1:23257/1‑149 (MQ=255) acggaaagtcgccttTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAAcatc < 1:163553‑M2/134‑1 (MQ=255) gAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTaa < 2:376762/149‑1 (MQ=255) | AAGGCGTAAAAAATGAAATAAAGGCAATATATGGTAGTCTGGATCAACGTCAGCTTTAAATGTGATGAGCCGTTCATGATACAGGAGTAGTAAAGGGCATATTTTACCAATGTTAAGGCGACTTTCCGTTTTATTGCGAGTCGCCTTTCCTGATTATAAATCTTATTGTTTACCTAATCATTTTCCTTTGCATAATGCGCCTGGGATTAATGGCGGGTGCTTTTAGGAATGAAAGAAAATGCAAGCAATAATATAATAATGGCCTAATTTCTTTGAACATCATTAA > NC_000913_3_hsa_tpiA/4535955‑4536240 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |