| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | 263238 = | 30 (1.260) | 4 (0.180) | 4/270 | 2.6 | 12.2% | intergenic (‑26/+90) | ykfN/ykfI | pseudogene, YdiA family/CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| ? | NC_000913_3_hsa_tpiA | 263263 = | 29 (1.290) | intergenic (‑51/+65) | ykfN/ykfI | pseudogene, YdiA family/CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CTTGGCTGCAGGTTTAGTTGTACACCACTCCTAAATTTAATGTGTTGGCAATGTGTTCAATAAAGCTCGAACAAATTAGCTCATTATGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTCATCGTACTACGTTGTTACGGCTTTGCCGCAACAAGCCAGTTGCCTGCCGCGCTCG > NC_000913_3_hsa_tpiA/263095‑263384 | ctccgggctgcagacattctgcgagcgcggcaggcaactggcttgttgcggcaaagccgtaacaacgtagtacgatgaacattgcgtacaaccttcccgatttacatttctgaacttcctcccttgtttacctattgcgtaatGCGCCt > 2:239686‑M1/144‑149 (MQ=255) tccgggctgcagacattctgcgagcgcggcaggcaactggcttgttgcggcaaagccgtaacaacgtagtacgatgaacattgcgtacaaccttcccgatttacatttctgaacttcctcccttgtttacctattgcgtaatGCGCCTg > 1:348665‑M1/143‑149 (MQ=255) ggCTGCAGGTTTAGTTGTACACCACTCCTACATTTAATGTGTTGGCAATGTGTTCAATAAAGCTCGCCCGTAGTAGCTCCAAAGCATCTTTGAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGcc < 1:310714/149‑1 (MQ=255) cagacattctgcgagcgcggcaggcaactggcttgttgcggcaaagccgtaacaacgtagtacgatgaacattgcgtacaaccttcccgatttacatttctgaacttcctcccttgtttacctattgcgtaatGCGCCTGCCGGgtagt < 1:378615‑M1/16‑1 (MQ=255) tttAGTTGTACACCACTCCTAAATTTAATGTGTTGGCAATGTGTTCAATAACGCTCGAACAAATTAGCTCATTATGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGtagtag < 2:397930/149‑1 (MQ=255) attctgcgagcgcggcaggcaactggcttgttgcggcaaagccgtaacaacgtagtacgatgaacattgcgtacaaccttcccgatttacatttctgaacttcctcccttgtttacctattgcgtaatGCGCCTGCCGGGTAGTAGCAg > 2:378615‑M1/129‑149 (MQ=255) ccTAAATTTAAGGTTTTGGCAAGGTGTTCAATAAAGCTCGAACAAATTAGCTCATTATGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAAt < 1:143222/149‑1 (MQ=255) ccTAAACTTAATGTGTTGGCAATGTGTTCAATAAAGCTCGAACAAATTAGCTCATTATGATCGGTTAATACTTCAACTTCTGGTGGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAAt < 1:26222/149‑1 (MQ=255) cTAAATTTATGCTGTTGGCAATTTGTTCAATAAAGCTCGAACAAATTAGCTCAGTATGATCGGTTATTACTTCAACTTCTGGTTGCATGATTGTTTAACCCCTAATAGTTAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATa < 2:176610/149‑1 (MQ=255) cTAAATTTAATTTGTTGGCAATGGGTTGAATAAAGCTCGAACAAATTAGCTCATTATGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATa < 2:37958/149‑1 (MQ=255) cTAAATTTAATGTGTTGGCAATGTGTTCAATAAAGCTCGAACAAATTAGCTCATTATGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCAGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATa > 2:220271/1‑149 (MQ=255) ggcaaagccgtaacaacgtagtacgatgaacattgcgtacaaccttcccgatttacatttctgaacttcctcccttgtttacctattgcgtaatGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGt < 1:230704‑M1/55‑1 (MQ=255) tgtgTTCAATAAAGCTAGAACAAATTAGCTCATTATGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTc < 2:277217/149‑1 (MQ=255) gtgtTCAATAAAGCTCGAACAAATTAGCTCATTATGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCa < 1:129980/149‑1 (MQ=255) aaagccgtaacaacgtagtacgatgaacattgcgtacaaccttcccgatttacatttctgaacttcctcccttgtttacctattgcgtaatGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCa > 2:230704‑M1/92‑149 (MQ=255) ttCAATAAAGCTCGAACAAATTAGCTCATTATGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTGGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGag > 1:195794/1‑148 (MQ=255) ttCAATAAAGCTCGAACAAATTAACTCATTATGATCGGTTAAGACCTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGGCGCAGGCGCATTACGCAACAGGTAAACACGGCAGGAAGTTgagag > 1:333438/1‑148 (MQ=255) tAGCTCATTATGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAATAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTa > 1:98173/1‑149 (MQ=255) cTCATTATGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGc > 1:221617/1‑149 (MQ=255) tCATTATGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGAAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGTCTGTACGCa > 1:372213/1‑149 (MQ=255) cATTATGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCaa < 2:330198/149‑1 (MQ=255) tGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTc > 1:28372/1‑149 (MQ=255) gATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATGGGGAAGGTTGTACGCAAGGTTcc > 1:154058/1‑148 (MQ=255) ttAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTCATc < 1:20759/145‑1 (MQ=255) ttAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTCATc > 2:20759/1‑145 (MQ=255) gtcgggTTGCAGGATTGTATGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTCATCGTACTACGTTGTTACgg < 2:78840/145‑1 (MQ=255) tGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGtt < 2:24515/86‑1 (MQ=255) tGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGtt > 1:24515/1‑86 (MQ=255) aTGATTGTTTGTCCGTAAAAAGATACCGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGCGAACGTTCCGAAATGTAAATCGGGAAGGTTGTCCGCAATGTTCATCGTACTACATTGTTACGGCTTAGCCGcc > 2:268523/1‑148 (MQ=255) tGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTCATCGTACTACGTTGTTACGGCTTTGCCGcaa > 1:300632/1‑149 (MQ=255) gtttgtCCGTAAAAAGATAACGCACCTGCCGGGTAGTAGCAGGCGCATTACTCAATAGGTAAACAAGGGAGGAATTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTAATCGTACTACGTTGTTACGGCTTTGCCGCAACAAGc > 2:312299/1‑149 (MQ=255) tCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTCATCGTACTACGTTGTTACGGCTTTGCCGCAACAAGCCAGtt < 2:28372/149‑1 (MQ=255) cGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTCATCGTACTACGTTGTTACGGCTTTGCCGCAACAAGCCAGTtga > 1:305700/1‑148 (MQ=255) gTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAGTAGGTAAACAAGGGAGGAACCTCAGAAATGTAAATCGAGAAGGTTGTACGCAATGTTCATCGTACTACGTTGTTACGGCTTTGCCGCAACAAGCCCGTtgcc > 1:380264/1‑149 (MQ=255) tAAAAAGTTAACGCGCCTGCCGGGTAATAGCAGGCGAATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTCATCGTACTACGTTGTTACGGCTTTGCCGCAACAAGCCAGTtgcct < 2:336693/149‑1 (MQ=255) aCGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTCATCGTACTACGTTGTTACGGCTTTGCCGCAACAAGCCAGTTGCCTGCCGCGCTCg < 1:285556/149‑1 (MQ=255) | CTTGGCTGCAGGTTTAGTTGTACACCACTCCTAAATTTAATGTGTTGGCAATGTGTTCAATAAAGCTCGAACAAATTAGCTCATTATGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTCATCGTACTACGTTGTTACGGCTTTGCCGCAACAAGCCAGTTGCCTGCCGCGCTCG > NC_000913_3_hsa_tpiA/263095‑263384 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |