New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	263238 =	30 (1.260)	4 (0.180)	4/270	2.6	12.2%	intergenic (‑26/+90)	ykfN/ykfI	pseudogene, YdiA family/CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system
	?	NC_000913_3_hsa_tpiA	263263 =	29 (1.290)					intergenic (‑51/+65)	ykfN/ykfI	pseudogene, YdiA family/CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system
Rejected: Frequency below/above cutoff threshold.

CCTAAATTTAATGTGTTGGCAATGTGTTCAATAAAGCTCGAACAAATTAGCTCATTATGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTCATCGTACTACGTTGTTACGGCTTTGCCGCAACAAGCCAGTTGCCTGCCGCGCTCGCAGAATGTCTGCAGCCCGGAG  >  NC_000913_3_hsa_tpiA/263124‑263405                                                                                                                                            |                                                                                                                                               ccTAAATTTAAGGTTTTGGCAAGGTGTTCAATAAAGCTCGAACAAATTAGCTCATTATGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAAt                                                                                                                                       <  1:143222/149‑1 (MQ=255) ccTAAACTTAATGTGTTGGCAATGTGTTCAATAAAGCTCGAACAAATTAGCTCATTATGATCGGTTAATACTTCAACTTCTGGTGGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAAt                                                                                                                                       <  1:26222/149‑1 (MQ=255)  cTAAATTTATGCTGTTGGCAATTTGTTCAATAAAGCTCGAACAAATTAGCTCAGTATGATCGGTTATTACTTCAACTTCTGGTTGCATGATTGTTTAACCCCTAATAGTTAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATa                                                                                                                                      <  2:176610/149‑1 (MQ=255)  cTAAATTTAATTTGTTGGCAATGGGTTGAATAAAGCTCGAACAAATTAGCTCATTATGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATa                                                                                                                                      <  2:37958/149‑1 (MQ=255)  cTAAATTTAATGTGTTGGCAATGTGTTCAATAAAGCTCGAACAAATTAGCTCATTATGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCAGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATa                                                                                                                                      >  2:220271/1‑149 (MQ=255)                     ggcaaagccgtaacaacgtagtacgatgaacattgcgtacaaccttcccgatttacatttctgaacttcctcccttgtttacctattgcgtaatGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGt                                                                                                                   <  1:230704‑M1/55‑1 (MQ=255)                       tgtgTTCAATAAAGCTAGAACAAATTAGCTCATTATGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTc                                                                                                                 <  2:277217/149‑1 (MQ=255)                        gtgtTCAATAAAGCTCGAACAAATTAGCTCATTATGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCa                                                                                                                <  1:129980/149‑1 (MQ=255)                        aaagccgtaacaacgtagtacgatgaacattgcgtacaaccttcccgatttacatttctgaacttcctcccttgtttacctattgcgtaatGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCa                                                                                                                >  2:230704‑M1/92‑149 (MQ=255)                           ttCAATAAAGCTCGAACAAATTAGCTCATTATGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTGGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGag                                                                                                             >  1:195794/1‑148 (MQ=255)                           ttCAATAAAGCTCGAACAAATTAACTCATTATGATCGGTTAAGACCTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGGCGCAGGCGCATTACGCAACAGGTAAACACGGCAGGAAGTTgagag                                                                                                             >  1:333438/1‑148 (MQ=255)                                                tAGCTCATTATGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAATAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTa                                                                                        >  1:98173/1‑149 (MQ=255)                                                   cTCATTATGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGc                                                                                     >  1:221617/1‑149 (MQ=255)                                                    tCATTATGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGAAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGTCTGTACGCa                                                                                    >  1:372213/1‑149 (MQ=255)                                                     cATTATGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCaa                                                                                   <  2:330198/149‑1 (MQ=255)                                                          tGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTc                                                                              >  1:28372/1‑149 (MQ=255)                                                           gATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATGGGGAAGGTTGTACGCAAGGTTcc                                                                             >  1:154058/1‑148 (MQ=255)                                                                 ttAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTCATc                                                                           <  1:20759/145‑1 (MQ=255)                                                                 ttAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTCATc                                                                           >  2:20759/1‑145 (MQ=255)                                                                              gtcgggTTGCAGGATTGTATGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTCATCGTACTACGTTGTTACgg                                                          <  2:78840/145‑1 (MQ=255)                                                                                  tgaacttcctcccttgtttacctattgcgtaatgcgcctgctactacccggcaggcgcATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTCATCGTACTACGTTGTTACGGCttt                                                      >  2:230704‑M2/59‑149 (MQ=255)                                                                                     tGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGtt                                                                                                                  >  1:24515/1‑86 (MQ=255)                                                                                     tGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGtt                                                                                                                  <  2:24515/86‑1 (MQ=255)                                                                                     acttcctcccttgtttacctattgcgtaatgcgcctgctactacccggcaggcgcATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTCATCGTACTACGTTGTTACGGCTTTGcc                                                   <  1:230704‑M2/94‑1 (MQ=255)                                                                                        aTGATTGTTTGTCCGTAAAAAGATACCGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGCGAACGTTCCGAAATGTAAATCGGGAAGGTTGTCCGCAATGTTCATCGTACTACATTGTTACGGCTTAGCCGcc                                                >  2:268523/1‑148 (MQ=255)                                                                                         tGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTCATCGTACTACGTTGTTACGGCTTTGCCGcaa                                               >  1:300632/1‑149 (MQ=255)                                                                                              gtttgtCCGTAAAAAGATAACGCACCTGCCGGGTAGTAGCAGGCGCATTACTCAATAGGTAAACAAGGGAGGAATTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTAATCGTACTACGTTGTTACGGCTTTGCCGCAACAAGc                                          >  2:312299/1‑149 (MQ=255)                                                                                                   tCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTCATCGTACTACGTTGTTACGGCTTTGCCGCAACAAGCCAGtt                                     <  2:28372/149‑1 (MQ=255)                                                                                                     cGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTCATCGTACTACGTTGTTACGGCTTTGCCGCAACAAGCCAGTtga                                   >  1:305700/1‑148 (MQ=255)                                                                                                      gTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAGTAGGTAAACAAGGGAGGAACCTCAGAAATGTAAATCGAGAAGGTTGTACGCAATGTTCATCGTACTACGTTGTTACGGCTTTGCCGCAACAAGCCCGTtgcc                                  >  1:380264/1‑149 (MQ=255)                                                                                                       tAAAAAGTTAACGCGCCTGCCGGGTAATAGCAGGCGAATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTCATCGTACTACGTTGTTACGGCTTTGCCGCAACAAGCCAGTtgcct                                 <  2:336693/149‑1 (MQ=255)                                                                                                                 aCGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTCATCGTACTACGTTGTTACGGCTTTGCCGCAACAAGCCAGTTGCCTGCCGCGCTCg                       <  1:285556/149‑1 (MQ=255)                                                                                                                       ctgctactacccggcaggcgcATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTCATCGTACTACGTTGTTACGGCTTTGCCGCAACAAGCCAGTTGCCTGCCGCGCTCGCAGAAt                 >  2:378615‑M2/22‑149 (MQ=255)                                                                                                                        TGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTCATCGTACTACGTTGTTACGGCTTTGCCGCAACAAGCCAGTTGCCTGCCGCGCTCGCAGAATg                <  1:345911‑M1/149‑1 (MQ=255)                                                                                                                            actacccggcaggcgcATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTCATCGTACTACGTTGTTACGGCTTTGCCGCAACAAGCCAGTTGCCTGCCGCGCTCGCAGAATGTCTg            <  1:378615‑M2/133‑1 (MQ=255)                                                                                                                              gtagtaGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGACGTTCAGAAATGTAAATCGGGAAGCTTGTACGCAATGTTCATCGTACTACGTTGTTGCGGCTTTGCCGCAACAAGCCAGTTGCCTGCCGCGCTCGCAGAATGTCTGCa          >  2:398935/1‑149 (MQ=255)                                                                                                                                     caggcgcATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTCATCGTACTACGTTGTTACGGCTTTGCCGCAACAAGCCAGTTGCCTGCCGCGCTCGCAGAATGTCTGCAGCCCGga   >  1:348665‑M2/8‑149 (MQ=255)                                                                                                                                      aggcgcATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTCATCGTACTACGTTGTTACGGCTTTGCCGCAACAAGCCAGTTGCCTGCCGCGCTCGCAGAATGTCTGCAGCCCGgag  >  2:239686‑M2/7‑149 (MQ=255)                                                                                                                                            |                                                                                                                                               CCTAAATTTAATGTGTTGGCAATGTGTTCAATAAAGCTCGAACAAATTAGCTCATTATGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGGAAGGTTGTACGCAATGTTCATCGTACTACGTTGTTACGGCTTTGCCGCAACAAGCCAGTTGCCTGCCGCGCTCGCAGAATGTCTGCAGCCCGGAG  >  NC_000913_3_hsa_tpiA/263124‑263405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.