| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_tpiA | = 1665225 | 19 (0.800) | 4 (0.180) | 4/268 | 2.6 | 17.5% | intergenic (+105/‑90) | dmsD/clcB | twin‑argninine leader‑binding protein for DmsA and TorA/H(+)/Cl(‑) exchange transporter |
| ? | NC_000913_3_hsa_tpiA | = 1665236 | 20 (0.900) | intergenic (+116/‑79) | dmsD/clcB | twin‑argninine leader‑binding protein for DmsA and TorA/H(+)/Cl(‑) exchange transporter | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AACTGTTAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTTCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTT > NC_000913_3_hsa_tpiA/1665080‑1665371 | aaCTGTTAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGAACGCACTGCTTTTGCGGCTgg > 2:256980/1‑149 (MQ=255) ttAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCctct > 1:267056/1‑149 (MQ=255) tatTGCCGGAGGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCAt < 2:392421/149‑1 (MQ=255) tatTGCCGGAGGGGGACGATTACGCGCGACCAGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACGGGTGTTGCGGCTGGCGTCTTTTGCCGGAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCAt < 2:143470/149‑1 (MQ=255) ggATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCaaaagag < 2:250003‑M1/94‑8 (MQ=255) ggATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCaaaagag > 1:250003‑M1/1‑87 (MQ=255) gATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCCCATGCatcatc > 1:22637/1‑149 (MQ=255) ggtaCGACTACGTGCAATCCGGTAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTaca < 2:171697/146‑1 (MQ=255) gcAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGAt > 1:26742/1‑149 (MQ=255) gCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCaaaagaggccagccgcaaaagcagtgcgtgctttaagagat > 1:167340‑M1/1‑61 (MQ=255) gCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCaaaagaggccagccgcaaaagcagtgcgtgctttaagagat < 2:167340‑M1/102‑42 (MQ=255) ggTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTATTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATGTACACATCTATCCGGATCTGCGCACTATGTTCCa < 2:333913/149‑1 (MQ=255) gTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTTCCAc < 2:258286/149‑1 (MQ=255) tCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCGCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTTCAACCGTCTGCtt > 1:321055/1‑149 (MQ=255) aCGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCAACACATCTCTCCGGATCTGCGCACTATGTTCCACCGTCTGCTTAt > 1:267331/1‑149 (MQ=255) tttttATCCCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTGGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCAGGCATCATCTACACATCTATCCGGATCTGCGCACTATGTTCCACCGTCTGCTTATCGCaa < 2:18514/149‑1 (MQ=255) aTCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTgccgcaaaagcagtgcgtgctttaagagataaaaaaacgtgacactgtaacctattattgc < 2:167340‑M2/102‑62 (MQ=255) aTCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTgccgcaaaagcagtgcgtgctttaagagataaaaaaacgtgacactgtaacctattattgc > 1:167340‑M2/1‑41 (MQ=255) tctcTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTTCCACCGTCTGCTTAt < 2:116360/138‑1 (MQ=255) tctcTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTTCCACCGTCTGCTTAt > 1:116360/1‑138 (MQ=255) ctTAAATCCCGCACTGCTTTGGCGGCTGGCCTCTTTTGTCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTTCCACCGTCTGCTTATCGCAACAGtcgtcg < 1:392652/149‑1 (MQ=255) ttAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCCCACTATGTTCCACCGTCTGCTTATGCCAACAGCCGTCgg > 2:392652/1‑149 (MQ=255) cacgcacTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTTCCACCGTCTGCTTATCGCAACAGTCGTCGGTATtct > 1:191273/1‑149 (MQ=255) cTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGGGCACTATGTTCCACCGTCTGCTTATCGCAACCGTCGTCGGTATTTTCGCGGc > 2:116719/1‑149 (MQ=255) ggCTGGCCTCCTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTTCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTttgccgtt > 2:216470/1‑149 (MQ=255) | AACTGTTAATTCCTGTCGCGGTTAAACCGCTGTTTCGATAGGATCACCGTAATATTGCCGGATGGTGACGATTACGCGCAATCCGGCAATAATAGGTTACAGTGTCACGTTTTTTTATCTCTTAAAGCACGCACTGCTTTTGCGGCTGGCCTCTTTTGCCGCAAAATAGTCGCCCGTGTTTCATTGCCCATTTCTGCTCATGCATCATCTACACATCTATCCGGATCTGCGCACTATGTTCCACCGTCTGCTTATCGCAACAGTCGTCGGTATTCTCGCGGCCTTTGCCGTT > NC_000913_3_hsa_tpiA/1665080‑1665371 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |