New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 1207805	20 (0.450)	13 (0.330)	13/242	NT	34.8%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913_3_hsa_tpiA	= 1209602	31 (0.790)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

ACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCG  >  NC_000913_3_hsa_tpiA/1209455‑1209747                                                                                                                                                    |                                                                                                                                                  tgctAAATGCGGCCAGTTATTTGGCAGATGAGCCTTCGCCAGTTCCGGGGATTCTTCAGCAGAAAAGGCGGCACCATTGGATTCCAGCCAGCCTATGGGCGGAGTGGGTGAAGGCCACGGAACCGGGACCCCACCACGTAATGCCGAGc                                                                                                                                                  <  2:744395/146‑1 (MQ=255) aCGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCACCAGGTAATGCAGAGc                                                                                                                                                  <  2:764913‑M2/149‑2 (MQ=255) aCGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGc                                                                                                                                                  >  1:315725‑M2/1‑148 (MQ=255)     aaaTCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATGCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttc                                                                                                                                              >  2:362056‑M2/1‑144 (MQ=255)        tCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcc                                                                                                                                           >  1:786318‑M2/1‑141 (MQ=255)            gCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaa                                                                                                                                       >  1:485458‑M2/1‑137 (MQ=255)            gCAATTTACTTGGCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaa                                                                                                                                       >  1:63719‑M2/1‑137 (MQ=255)                 ttatttGTCGGTTAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCCGCGacctgtcccaaaccaag                                                                                                                                  >  2:518928‑M2/1‑132 (MQ=255)                 ttatttGTCGGATAAGCCTTGGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaag                                                                                                                                  >  2:22765‑M2/1‑132 (MQ=255)                    tttGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATCCCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGtt                                                                                                                               <  1:827484/149‑1 (MQ=255)                      cgTCCGATAAGCCTTTGCCAGTTCCGGCTATTCTTCAGCAAATAAAGCCGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTa                                                                                                                             <  1:362974/148‑1 (MQ=255)                       gTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttc                                                                                                                            <  2:458350‑M2/149‑24 (MQ=255)                        tCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACAAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATg                                                                                                                           >  1:305063/1‑149 (MQ=255)                        tCGGATAAGCCTTTGCCAGTTCCGGGCATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTCGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATCCAGAGccttctcccaaaccaaggattctc                                                                                                                           <  2:218294‑M2/149‑25 (MQ=255)                           gATAAGCCTTTGCCAGTTCCGGGTATTCTACAGCAGAAAAAGCGGCACCATTGCGTTTCAGCCAGCCTGTAGGCGGAGTGGCTGAAGGCCACGGAACCGGGACCCCAACAGGTAATGCAGAGCCTACTCCCAAACCAACGTTTATGaaa                                                                                                                        >  1:709788/1‑149 (MQ=255)                             tatgCCTTGGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGGGTGGTTGAAGGCCACGGAACCGTGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAAt                                                                                                                      <  2:345412/146‑1 (MQ=255)                                gCCTTTGCCAGTTCCGGGTAGTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaa                                                                                                                   <  1:509601/149‑1 (MQ=255)                                       ccAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCAAGCAGGGGGGCGGGGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaagggtttcgagagccgtttgcaca                                                                                                            <  1:795107‑M2/149‑40 (MQ=255)                                        cacttCCGGGTATTCTTCGACATGAAAGGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAAc                                                                                                           <  2:591646/146‑1 (MQ=255)                                                    ttcttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACATCAACAGTTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGca                                                                                               <  2:366154/149‑1 (MQ=255)                                                    tcgtgaagcagaaaaagCGCCACCATTGGATTTCAGCCAGCCTGTTGGCTGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGTTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatt                                                                                               >  2:154845‑M2/7‑97 (MQ=255)                                                          agcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatat                                                                                         <  1:432595‑M2/149‑59 (MQ=255)                                                           gcagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTcc                                                                                        >  1:632254/1‑149 (MQ=255)                                                               aaaaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt                                                                                    >  1:572001/1‑149 (MQ=255)                                                                 aaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAACCAAACGGTTATGCAACAGCAGACATAACAAGCAAATGGCATCATTCCTGCttt                                                                                  >  1:743640/1‑149 (MQ=255)                                                                 aaaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGGAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGACGAAATAACAAGCAAATGGCATCATTCCTGCttt                                                                                  >  1:113886/1‑149 (MQ=255)                                                                 aaaGCGGCACCATTGCAATTCAACCAGCCTGTTGGCGTAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaa                                                                                  >  1:613272‑M2/1‑84 (MQ=255)                                                                  aggcgTCACCAGTGCATTCCACGCATCCTGTCGGCGGCGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaatcccatgttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaac                                                                                 >  1:167111‑M2/3‑83 (MQ=255)                                                                          ccATTGCCTCTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcctgctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattctt                                                                         >  2:576071‑M2/1‑75 (MQ=255)                                                                           ccttGCATTTCAGCCAGCCTTGTGGCGGAGTGGCTGAAGGCCACTGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggggg                                                                        <  1:61302/147‑1 (MQ=255)                                                                           cATTGCATTTCAGCCAGCCTGTTGGCTGAGCGCCTCCAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCCACGTTTATGAAACTGAAGAAATCACAACCCAACGGCATCAATCCTGCTTTTACCCgaggg                                                                        >  2:815065/1‑149 (MQ=255)                                                                            aTTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa                                                                       >  2:774293/1‑149 (MQ=255)                                                                            aTTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACACACAGGTAATGCAGAGccttctcccacaccaagggtttcgacagtcgtttgcgccgtgccctacgctttgatatcgcaacaccgattcttgc                                                                       <  1:112231‑M2/149‑77 (MQ=255)                                                                            aTTGCATTTCAGCCAGCCTGTTGGCGGAGCGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAGCCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa                                                                       <  1:365133/149‑1 (MQ=255)                                                                             ttGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAAACACATCATTCCTGCGTTTACCACGGGGAt                                                                      >  1:6544/1‑149 (MQ=255)                                                                               ggagttCAGATAGCATGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTACTCCCAAACCCCCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAttt                                                                    <  2:556577/145‑1 (MQ=255)                                                                                       ggcagccggTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagc                                                            >  1:628205‑M2/3‑62 (MQ=255)                                                                                        ccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagca                                                           >  1:92313‑M2/1‑61 (MQ=255)                                                                                           gccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcg                                                        >  1:418135‑M2/1‑58 (MQ=255)                                                                                             cTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcc                                                      <  2:335853‑M2/149‑94 (MQ=255)                                                                                                       aGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAACAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCAATGTAcgc                                            >  1:602725/1‑149 (MQ=255)                                                                                                           gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTAACAAAACAACGGTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTCCCAGGGGGCTTTAACCTGCTTCTTGGCTATGTACGCGTAt                                        >  1:497840/1‑149 (MQ=255)                                                                                                              gAAGGCCACGGAACCGGGACACCAATCGGTAATGCAGAGCCTTCTCCAAAAACAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaa                                     <  1:274793/149‑1 (MQ=255)                                                                                                                agtccAGGGAACCGAGACACCAACAGGTAATGCAGAGCCTGTTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGTGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaaca                                   <  2:45147/146‑1 (MQ=255)                                                                                                                  gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaccgaa                                 >  1:356244/1‑144 (MQ=255)                                                                                                                    cACGGAAGCGGGACACCAACAGGTAAGGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggcttaacagcagcgcgcgaagtgcggtaagtaactggtc                               >  2:482241‑M2/1‑33 (MQ=255)                                                                                                                      cGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc                             <  1:105714/149‑1 (MQ=255)                                                                                                                           acGGGACACCACGAGGTAATGGAGAGCCTTCTCACAGACCAACGTTTATGAAAATGAAGATATAACAAGCAAATGGCATCATTCCTGCTTTTACTAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGaa                        <  2:11700/148‑1 (MQ=255)                                                                                                                             gggACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACGAATAACCAGAaca                      >  2:293905/1‑149 (MQ=255)                                                                                                                             gggACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAaca                      <  2:632254/149‑1 (MQ=255)                                                                                                                                   ccAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAAc                                                                                                           <  1:427760/58‑1 (MQ=255)                                                                                                                                   ccAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAAc                                                                                                           >  2:427760/1‑58 (MQ=255)                                                                                                                                      aCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTAc             >  1:57518/1‑149 (MQ=255)                                                                                                                                      aCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATATAc             >  1:560588/1‑149 (MQ=255)                                                                                                                                        aGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATGCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAAATCTACaa           >  2:689926/1‑149 (MQ=255)                                                                                                                                                 agagCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAGCGTTATgca  >  2:339497/1‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                  ACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCG  >  NC_000913_3_hsa_tpiA/1209455‑1209747

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.