New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA 2219648 =NA (NA)4 (0.150) 4/266 3.4 9.5% noncoding (24/34 nt) REP152 (repetitive extragenic palindromic) element; contains 1 REP sequences REP152 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913_3_hsa_tpiA = 4094342 38 (1.390)noncoding (27/402 nt) REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTCTGGAATCAACAGATGAAATATGACGCCGAGCCTGGCAAGTTCAATGTCTTTATCGGCACTGATTCCGCACGCGTTAAGAAAGGCGAGTTTGAGTTGCTGTAATGCTTTAGTAAGGGCGCGACGTTTGCGCCCTTTGTAGGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_hsa_tpiA/2219796‑2219648
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggatGCGGCGCGAGCGCCTTATCCGGCCTACGGGTCGTGCATCCGACAACACCGAATTTACAGGAACACAGAACATGCAAAACATTACTCAGTCCTGGTTTGTCCAGGGAATGATCAAAGCCACCACCGACGCCTGGCTGAAAGGCTGGGA  <  NC_000913_3_hsa_tpiA/4094342‑4094196
                                                                                                                                                                                                                                                                                                        
tttTGGAATCAACAGAGGAAAGATGACGCCGAGCCTGGCAAGTGCAATGTGTGTATCGGCACTGATTCCGCACGCGGTAAGAAGGGCGAGTTTGAGTTGCTGTAATGCTTTAGTAAGGGCGCGACGTTTGCGCCCTTTGTAGGCCGGAT                                                                                                                                                     <  2:14505/146‑1
                                                   TTTATCGGCACTGATTCCGCACGCGTTAAGAAAGGCGAGTTTGAGTTGCTGTAATGCTTTAGTAAGGGCGCGACGTTTGCGCCCTTTGTAGGCC                                                                                                                                                         <  1:195324/94‑1
                                                   TTTATCGGCACTGATTCCGCACGCGTTAAGAAAGGCGAGTTTGAGTTGCTGTAATGCTTTAGTAAGGGCGCGACGTTTGCGCCCTTTGTAGGCC                                                                                                                                                         >  2:195324/1‑94
                                                                                                  GCTGTAATGCTTTAGTAAGGGCGCGACGTTTGCGCCCTTTGTAGGCCGGATGCGGCGCGAGCGCCTTAT                                                                                                                                   <  1:55169/69‑1
                                                                                                  GCTGTAATGCTTTAGTAAGGGCGCGACGTTTGCGCCCTTTGTAGGCCGGATGCGGCGCGAGCGCCTTAT                                                                                                                                   >  2:55169/1‑69
                                                                                                                                           TAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCCTACGGGTCGTGCATCCGACAACACCGAATTTACAGGAACACAGAACATGCAAAACATTACTCAGTCCTGGTTTGTCCAGGGAATGATCAAA                                  >  1:290606/1‑125
                                                                                                                                           TAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCCTACGGGTCGTGCATCCGACAACACCGAATTTACAGGAACACAGAACATGCAAAACATTACTCAGTCCTGGTTTGTCCAGGGAATGATCAAA                                  <  2:290606/125‑1
                                                                                                                                                CGGATGCGGCGCGAGCGCCTTATCCGGCTCACGGGTTGTGCATCCGACAAAACCGAATTTACAGGAACACAGAACATGCAAAACATTACTCAGTCCTGGTTTGTCCAGGGAATGATCAAAGCCACCACCGACGCCTGGCTGAAAGGCTG     <  2:254385/149‑1
                                                                                                                                                CGGAGGCGGCGCGAGCGCCTGAGCCGGCCTACGGGTCGTGCATCCGACAACACCGAATTTACAGGAACACAGAACATGCAAAACATTACTCAGTCCTGGTTTGTCCAGGGAATGATCAAAGCCACCACCGACGCCTGGCTGAAAGGCTG     <  2:80813/149‑1
                                                                                                                                                   ATGCGGCGCGAGCGCCTTATCCGGCCTACGGGTCGTGCATCCGACAACACCGAATTTACAGGAACACAGAACATGCAAAACATTACTCAGTCCTGGTTTGTCCAGGGAATGATCAAAGCCACCACCGACGCCTGGCTGAAAGGCTGGGA  <  2:123195/149‑1
                                                                                                                                                                                                                                                                                                        
TTCTGGAATCAACAGATGAAATATGACGCCGAGCCTGGCAAGTTCAATGTCTTTATCGGCACTGATTCCGCACGCGTTAAGAAAGGCGAGTTTGAGTTGCTGTAATGCTTTAGTAAGGGCGCGACGTTTGCGCCCTTTGTAGGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_hsa_tpiA/2219796‑2219648
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggatGCGGCGCGAGCGCCTTATCCGGCCTACGGGTCGTGCATCCGACAACACCGAATTTACAGGAACACAGAACATGCAAAACATTACTCAGTCCTGGTTTGTCCAGGGAATGATCAAAGCCACCACCGACGCCTGGCTGAAAGGCTGGGA  <  NC_000913_3_hsa_tpiA/4094342‑4094196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.