New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	2219648 =	NA (NA)	4 (0.150)	4/266	3.4	9.5%	noncoding (24/34 nt)	REP152 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP152 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913_3_hsa_tpiA	= 4094342	38 (1.390)					noncoding (27/402 nt)	REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences	REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCCCAGCCTTTCAGCCAGGCGTCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTG‑TGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACT  >  NC_000913_3_hsa_tpiA/4094196‑4094488                                                                                                                                                   |                                                                                                                                                    tCCCAGCCTTTCAGCCAGGCGTCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCAt                                                                                                                                                   >  2:123195/1‑149 (MQ=255)    cAGCCTTTCAGCCAGGCGTCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTTTTGTCGGATGCACAACCCGTGAGCCGGATAAGGCGCTCGCGCCGCATCCg                                                                                                                                                >  2:254385/1‑149 (MQ=255)    cAGCCTTTCAGCCAGGCGTCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGCTCAGGCGCTCGCGCCGCCTCCg                                                                                                                                                >  2:80813/1‑149 (MQ=255)                      tCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGc                                                                                                                              <  1:407035/149‑1 (MQ=255)                      tCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGACTAATGTTTTGCATGTTCTGTGTTCCTGTAAATGCGGTGTTGTCGGATGCACGACACGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTCATGc                                                                                                                              >  2:480548/1‑149 (MQ=255)                                 tttGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATGCGGCGCGAGCGCCTTATCCGGccta                                                                                                                                           <  1:290606/125‑4 (MQ=38)                                 tttGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATGCGGCGCGAGCGCCTTATCCGGccta                                                                                                                                           >  2:290606/1‑122 (MQ=38)                                    gATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTc                                                                                                                >  2:387771/1‑149 (MQ=255)                                           cccTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAg                                                                                                         >  2:80506/1‑149 (MQ=255)                                             cTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGc                                                                                                       >  1:307213/1‑149 (MQ=255)                                                      ccAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTa                                                                                              <  2:171048/149‑1 (MQ=255)                                                       cAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTAt                                                                                             >  1:44292/1‑149 (MQ=255)                                                         ggACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTg                                                                                           <  2:44292/149‑1 (MQ=255)                                                          gACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGc                                                                                          >  2:179446/1‑149 (MQ=255)                                                             tGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGa                                                                                       <  1:387771/149‑1 (MQ=255)                                                             tGAGTAATGTTTTGCATGTCCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGa                                                                                       >  1:212194/1‑149 (MQ=255)                                                               aGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATGAGTGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTGCAACTAttctccacc                                                                                     >  2:210996/1‑142 (MQ=25)                                                               aGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGAGACGCTGTCGCGTCTTATCCGGCCTAAGACTATTTCCGAcc                                                                                     >  1:52504/1‑149 (MQ=25)                                                                    tGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAg                                                                                >  1:266119/1‑149 (MQ=255)                                                                              gTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAg                                                                      <  1:80506/149‑1 (MQ=255)                                                                              gTTCTGTGTTCCTGGAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCCGAATCGTTTAGTTTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAg                                                                      <  1:118886/149‑1 (MQ=17)                                                                                      ttCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTtg‑t                                                             <  2:307213/149‑1 (MQ=255)                                                                                       tCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGGCGCATCCGGCAATCAATGCCTGATGCGACGTTGTCGCGTCTTATCAGGCGTACAACTATTGCCGATCTGTAGGCCTGATAAGGCACTtg‑tg                                                            <  1:121424/149‑1 (MQ=255)                                                                                        ccTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTCTTGCCGACCTGTAGGCCGGATAAGGCCCTTG‑TGc                                                           >  1:57428/1‑149 (MQ=255)                                                                                         cagTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTG‑TGcc                                                          <  1:20126/147‑1 (MQ=255)                                                                                          tGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGTCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTG‑TGCCg                                                         <  1:67402/149‑1 (MQ=255)                                                                                          tGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTG‑TGCCg                                                         >  1:291371/1‑149 (MQ=255)                                                                                           gTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAGCTATTg                                                                                           >  1:240808/1‑115 (MQ=255)                                                                                           gTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAGCTATTg                                                                                           <  2:240808/115‑1 (MQ=255)                                                                                             aaaTTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTG‑TGCCGCAt                                                      >  1:382029/1‑149 (MQ=255)                                                                                                     cgttgtCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTG‑TGCCGCATCCGGcaat                                              <  1:339057/148‑1 (MQ=255)                                                                                                                 cACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTG‑TGCCGCATCCGGCAATCAATGCCTGATg                                  <  1:410931/149‑1 (MQ=255)                                                                                                                     aCCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTG‑TGCCGCATCCGGCAATCAATGCCTGATGCGAc                              <  1:480548/149‑1 (MQ=255)                                                                                                                      cccGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTG‑TGCCGCATCCGGCAATCAATGCCGGAttggccg                             >  1:169358/1‑143 (MQ=255)                                                                                                                       ccGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGACTGTTGTCGGGCCTACAACCAGTGCCGACCTGTAGGCCTGATAAGGCACTTG‑TGCCGCATCCGGCACTCAATGCCTGATGCGACGc                            >  1:249514/1‑149 (MQ=14)                                                                                                                            ggCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTG‑TGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTcg                       >  2:462955/1‑149 (MQ=255)                                                                                                                               cGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCATGAT‑TGGAAATTGTTTTCGCATACGGCAATCAGTTCCTGATGCGACGCTGTCGCGt                    >  1:371164/1‑149 (MQ=14)                                                                                                                                   tAAGGCGCTCGCGCCGCACCCGGCAATCAATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTG‑TGCCTCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTa                <  1:202521/149‑1 (MQ=255)                                                                                                                                          cTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGcc                                                                             <  2:420715/82‑1 (MQ=37)                                                                                                                                          cTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGcc                                                                             >  1:420715/1‑82 (MQ=37)                                                                                                                                           tCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTG‑TGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTcgc                      >  2:167448/1‑135 (MQ=35)                                                                                                                                                 cgcATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCTCGTGGATAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTG‑TGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACATCt  >  2:339793/1‑149 (MQ=11)                                                                                                                                                 cgcATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTG‑TGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCTCGTCTTATCATGCCTACAACt  >  1:37256/1‑149 (MQ=17)                                                                                                                                                   |                                                                                                                                                    TCCCAGCCTTTCAGCCAGGCGTCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTG‑TGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACT  >  NC_000913_3_hsa_tpiA/4094196‑4094488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.