New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_tpiA 2219648 =NA (NA)4 (0.150) 4/266 3.4 9.5% noncoding (24/34 nt) REP152 (repetitive extragenic palindromic) element; contains 1 REP sequences REP152 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913_3_hsa_tpiA = 4094342 38 (1.390)noncoding (27/402 nt) REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences REP299 (repetitive extragenic palindromic) element; contains 9 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCCCAGCCTTTCAGCCAGGCGTCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACT  >  NC_000913_3_hsa_tpiA/4094196‑4094488
                                                                                                                                                  |                                                                                                                                                   
tCCCAGCCTTTCAGCCAGGCGTCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCAt                                                                                                                                                   >  2:123195/1‑149 (MQ=255)
   cAGCCTTTCAGCCAGGCGTCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTTTTGTCGGATGCACAACCCGTGAGCCGGATAAGGCGCTCGCGCCGCATCCg                                                                                                                                                >  2:254385/1‑149 (MQ=255)
   cAGCCTTTCAGCCAGGCGTCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGCTCAGGCGCTCGCGCCGCCTCCg                                                                                                                                                >  2:80813/1‑149 (MQ=255)
                     tCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGc                                                                                                                              <  1:407035/149‑1 (MQ=255)
                     tCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGACTAATGTTTTGCATGTTCTGTGTTCCTGTAAATGCGGTGTTGTCGGATGCACGACACGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTCATGc                                                                                                                              >  2:480548/1‑149 (MQ=255)
                                tttGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATGCGGCGCGAGCGCCTTATCCGGccta                                                                                                                                           <  1:290606/125‑4 (MQ=38)
                                tttGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATGCGGCGCGAGCGCCTTATCCGGccta                                                                                                                                           >  2:290606/1‑122 (MQ=38)
                                   gATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTc                                                                                                                >  2:387771/1‑149 (MQ=255)
                                          cccTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAg                                                                                                         >  2:80506/1‑149 (MQ=255)
                                            cTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGc                                                                                                       >  1:307213/1‑149 (MQ=255)
                                                     ccAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTa                                                                                              <  2:171048/149‑1 (MQ=255)
                                                      cAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTAt                                                                                             >  1:44292/1‑149 (MQ=255)
                                                        ggACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTg                                                                                           <  2:44292/149‑1 (MQ=255)
                                                         gACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGc                                                                                          >  2:179446/1‑149 (MQ=255)
                                                            tGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGa                                                                                       <  1:387771/149‑1 (MQ=255)
                                                            tGAGTAATGTTTTGCATGTCCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGa                                                                                       >  1:212194/1‑149 (MQ=255)
                                                              aGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATGAGTGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTGCAACTAttctccacc                                                                                     >  2:210996/1‑142 (MQ=25)
                                                              aGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGAGACGCTGTCGCGTCTTATCCGGCCTAAGACTATTTCCGAcc                                                                                     >  1:52504/1‑149 (MQ=25)
                                                                   tGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAg                                                                                >  1:266119/1‑149 (MQ=255)
                                                                             gTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAg                                                                      <  1:80506/149‑1 (MQ=255)
                                                                             gTTCTGTGTTCCTGGAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCCGAATCGTTTAGTTTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAg                                                                      <  1:118886/149‑1 (MQ=17)
                                                                                     ttCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTtgt                                                             <  2:307213/149‑1 (MQ=255)
                                                                                      tCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGGCGCATCCGGCAATCAATGCCTGATGCGACGTTGTCGCGTCTTATCAGGCGTACAACTATTGCCGATCTGTAGGCCTGATAAGGCACTtgtg                                                            <  1:121424/149‑1 (MQ=255)
                                                                                       ccTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTCTTGCCGACCTGTAGGCCGGATAAGGCCCTTGTGc                                                           >  1:57428/1‑149 (MQ=255)
                                                                                        cagTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGcc                                                          <  1:20126/147‑1 (MQ=255)
                                                                                         tGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGTCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCg                                                         <  1:67402/149‑1 (MQ=255)
                                                                                         tGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCg                                                         >  1:291371/1‑149 (MQ=255)
                                                                                          gTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAGCTATTg                                                                                           >  1:240808/1‑115 (MQ=255)
                                                                                          gTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAGCTATTg                                                                                           <  2:240808/115‑1 (MQ=255)
                                                                                            aaaTTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCAt                                                      >  1:382029/1‑149 (MQ=255)
                                                                                                    cgttgtCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGcaat                                              <  1:339057/148‑1 (MQ=255)
                                                                                                                cACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATg                                  <  1:410931/149‑1 (MQ=255)
                                                                                                                    aCCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGAc                              <  1:480548/149‑1 (MQ=255)
                                                                                                                     cccGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCGGAttggccg                             >  1:169358/1‑143 (MQ=255)
                                                                                                                      ccGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGACTGTTGTCGGGCCTACAACCAGTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCACTCAATGCCTGATGCGACGc                            >  1:249514/1‑149 (MQ=14)
                                                                                                                           ggCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTcg                       >  2:462955/1‑149 (MQ=255)
                                                                                                                              cGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCATGATTGGAAATTGTTTTCGCATACGGCAATCAGTTCCTGATGCGACGCTGTCGCGt                    >  1:371164/1‑149 (MQ=14)
                                                                                                                                  tAAGGCGCTCGCGCCGCACCCGGCAATCAATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCTCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTa                <  1:202521/149‑1 (MQ=255)
                                                                                                                                         cTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGcc                                                                             <  2:420715/82‑1 (MQ=37)
                                                                                                                                         cTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGcc                                                                             >  1:420715/1‑82 (MQ=37)
                                                                                                                                          tCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTcgc                      >  2:167448/1‑135 (MQ=35)
                                                                                                                                                cgcATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCTCGTGGATAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACATCt  >  2:339793/1‑149 (MQ=11)
                                                                                                                                                cgcATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCTCGTCTTATCATGCCTACAACt  >  1:37256/1‑149 (MQ=17)
                                                                                                                                                  |                                                                                                                                                   
TCCCAGCCTTTCAGCCAGGCGTCGGTGGTGGCTTTGATCATTCCCTGGACAAACCAGGACTGAGTAATGTTTTGCATGTTCTGTGTTCCTGTAAATTCGGTGTTGTCGGATGCACGACCCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCTGATAAGGCACTTGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACT  >  NC_000913_3_hsa_tpiA/4094196‑4094488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.