New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 700388	25 (0.690)	6 (0.170)	5/274	NT	17.2%	coding (1207/1221 nt)	nagC	N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor
	?	NC_000913_3_hsa_tpiA	700983 =	33 (0.920)					coding (612/1221 nt)	nagC	N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor

TGCAAAAATTCCGCTGCACCCGGTACGGCGACGTTATCGTGCATCAGCACGCCGTCGATATCGCAAATTACATTTTTAATGGTCATGGACTACCCAGAATATTGACAACAATAAGCGCCACTATAAAAGCACATTAATTTTCCAGCAAATGCTGGAGCAAAATACCGTTGAGCATGGCGCGTTTTACCAGCGCAAAAGCGCCGATTGCCGAGCGGTGATCCAGCTCAGAACGTACCACCGGCAGATTAGTGCGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCA  >  NC_000913_3_hsa_tpiA/700241‑700536                                                                                                                                                    |                                                                                                                                                     tGCAAAAACGCCGCTGCACCCGGTACGGCGACGTTATCGTGCATCAGCACGCCGTCGATATCGCAAATTACATTTTTAATGGTCATGGACTACCCAGAATATTGACAACAATAAGCGCCACTATAAAAGCACATTAATTTTCCAGCaaa                                                                                                                                                     <  2:211827/149‑1 (MQ=255)    aaaaaTGCCGCTGCACCTGGTACGGCGACGTGATCGGTAAACAGAACAAAAATGATTTTTGAGGTGACATTTTGACCAGTCATTGACTACCCAGAATATTTACAACAATAAGCGCCACTATAAAAGCACATTAATTTTCCAGCAAATGc                                                                                                                                                  <  2:209215/149‑1 (MQ=255)              cTGCACCCGGTACGGCGACGTTATCGTGCATCAGCACGCCGTCGATATCGCAAGTTACATTGGTAATGGTCATGGACTACCCAGAATATTGACAACAATAAGCGCCACTATAAAAGCACATTAATTTTCCAGCAAATGCTGGAGCaaaa                                                                                                                                        >  1:363979/1‑149 (MQ=255)                      ggTACGGCGACGTTATCGTGCATCAGCACGCCGTAGATATCGCAAATTACATTTTTAATGGTGATGGACTACCCACAATATTAACAACAATAAGCGCCACTATAAAAGCATATTAATGTTCCATCAAATGCTGGAGCAAAATACCGTTg                                                                                                                                >  2:331444/1‑149 (MQ=255)                       gTACGGCGACGTTATCGTGCATCAGCACGCCGTCGATATCGCAAATTACATTTTTAATGGTCATGGACTACCCAGAATATTGACAACAATAAGCGCCACTATAAAAGCACATTAATTTTCCAGCAAATGCTGGAGCAAAATACCGTTGa                                                                                                                               <  2:592725/149‑1 (MQ=255)                            gCGACGTTATCGTGCATCAGCACGCCGTCGATATCGCAAATTACATTTTTAATGGTCATGGACTACCCAGAATATTGACACCAATAAGCGACACTATAAAAGCACATTAATGTTCCAGCCAATGCTGGAGCAAAATACCGTTTAGCAtt                                                                                                                          >  2:636816/1‑148 (MQ=255)                                  ttATCGTGCATCAGCACGCCGTCGATATCGCAAATTACATTTTTAATGGTCATGGACTACCCAGAATATTGACAACAATAAGCGCCACTATAAAAGCACATTAATTTTCCAGCAAgtgctccgccagcgccagactacggatatcgtga                                                                                                                    <  1:547817‑M1/149‑35 (MQ=255)                                     tCGTGCATCAGCACGCCGTCTATATCGCAAATTACATTTTTAATGGTCATGGACTACCCAGAATATTGACAACAATAAGCGCCACTATAAAAGCACATTAATTTTCCAGCAAATGCTGGAGCAAAATACCGTTGAGCATGGCGCGtttt                                                                                                                 <  2:535501/149‑1 (MQ=255)                                                     cGTCGATATCGCAAATTACATTTTTAATGGTCATGGACTACCCAGAATATTGACAACAATAAGCGCCACTATAAAAGCACATTAATTTTCCAGCAAgtgctccgccagcgccagactacggatatcgtgaccaacgaaacaggtcactt                                                                                                 >  2:556871‑M1/1‑96 (MQ=255)                                                     cGTCGATATCGCAAATTACATTTTTAATGGTCATGGACTACCCAGAATATTGACAACAATAAGCGCCACTATAAAAGCACATTAATTTTCCAGCAAATGCTGGAGCAACATACCGTTGAGCATGGCGCGTTTTACCAGCGCAAAAgcgc                                                                                                 <  1:578667/149‑1 (MQ=255)                                                     cGTCGATATCGCAAATTACATTTTTAATGGTCATAGACTACCCAGAATATTGACAACAATAAGCGCCACTATAAAAGCACATTAATTTTCCAGCAAATGCTGGAGCAAAATACCGTTGAGCATGGCGCGTTTTACCAGCGCAAAAgcgc                                                                                                 <  1:40484/149‑1 (MQ=255)                                                             tCGCAAATTACATTTTTAATGGTCATGGACTACCCAGCATATTGACAACAATAAGCGCAACTATAAAAGCACATTAATTTTCCAGAAAATACTCGAGCAAAATACCGTTGAGCATGGCGCGTTTTACCATCGCAAAAGCGCCGATTGcc                                                                                         >  2:110174/1‑149 (MQ=255)                                                                  agttACAGTTGTAATGGTCGTGGACTACCCAGAATATTGACAACAATAAGCGCCACTATAAGAGCACATTAATTTTCCAGCAAATGCTGGAGCAAAATACCGTTGAGCATGGCGCGTTTTACCAGCGCAAAAGCGCCGATTGCCGAGCg                                                                                    <  2:468104/147‑1 (MQ=255)                                                                            ttAATGGTCATGGACTACCCAGAATATTGACAACAATAAGCGCCACTATAACAGCACATTAATTTTCCAGCAAgtgctccgccagcgccagactacggatatcgtgacctacgaaacagctccctttaaaccgatctactagaccctct                                                                          >  2:90421‑M1/1‑73 (MQ=255)                                                                            ttAATGGTCAGGGAATCCCCAGAATATTGACAACAATAAGCGCCTCTATAAAAGCACATTACTTTTCCAGCAAgtgctccgccagcgccagactacggatatcgttaccaacgaaacagctcactctaaaagcttcttcccgagcttct                                                                          >  2:90291‑M1/1‑73 (MQ=255)                                                                               aTGGGCATGGACTACCCAGAATATTGACAACAATAAGCGCCACTATAAAAGCACATTAATTTTCCAGCAAATGCTGGAGCAAAAGACCGTTGAGCATGGCGCGTTTTACCAGCGCAAAAGCGCCGATTGCCGAGCGGTGATCCAGCTCa                                                                       <  1:58920/149‑1 (MQ=255)                                                                                  gTCATGGACTACCCAGAATATTGACAACAATAAGCGCCACTATAAAAGCACATTAATTTTCCAGCAAATGCTGGAGCAAAATACCGTTGAGCATGGCGCGTTTTACCAGCGCAAAAGCGCCGATTGCCGAGCGGTGATCCAGCTCAGaa                                                                    <  1:472359/149‑1 (MQ=255)                                                                                   tCATGGACTACCCAGAATATTGACAACAATAAGCGCCACTATAAAAGCACATTAATTTTCCAGCAAATGCTGGAGCAAAATACCGTTGAGCATGGCGCGTTTTACCAGCGCAAAAGCGCCGATTGCCGAGCGATGATCCAGCTCCGacg                                                                   >  2:382861/1‑147 (MQ=255)                                                                                      tGGACTACCCAGAATATTGAAAAAAATAAGCGCCACTACAAAAGCACATTACTTTTCCAGCAAATGCTGGAGCAAAAGACCGTTGAGCATGGCGCGTTTTACCAGCGCAAAAGCGCCGATTGCTGAGCGGTGATCCAGCTCAGAACGTa                                                                <  2:34478/149‑1 (MQ=255)                                                                                         aCTACCCAGAGTATTGACAACAATAAGCGCCAGTATAAAAGCACATTAATTTTCCAGCAAATGCTGGAGCCAAATACTGTTGAGCATGGCGCGTTTTACCAGCGCAAAAGCGCCGATTGCCGAGCGGTGATCCAGCTCAGAACGTacca                                                             <  2:74810/149‑1 (MQ=255)                                                                                         aCTACCCAGAATATTGACAACAATAAGCGCCACTATAAAAGCACATTAATTTTCCAGCAAgtgctccgccagcgccagactacggatatcgtgaccaacgaaacaggtcactttaaaacgttcttccagagcttctaccagcccccagt                                                             >  1:388185‑M1/1‑60 (MQ=255)                                                                                            aCCCAGAATATTGACAACAATAAGCGCTACTATAAAAGCACATTAATCTTCCAGCAAgtgctccgccagcgccagactacggatatcgtgaccaacgaaacaggtcactttaaaacgttcttccagagcttctaccagcccccagtttt                                                          <  2:235775‑M1/149‑93 (MQ=255)                                                                                                           aacaaTAAGCGCCACTATAAAAGCACATTAATTTTCCAGCAAATGCTGGAGCAAAATACCGTTGAGCATGGCGCGTTTTACCAGCGCAAAAGCGCCGATTGCCGAGCGGTGATCCAGCTCAGAACGTACCACCGGCAGATTAGTGCGaa                                           >  2:18384/1‑149 (MQ=255)                                                                                                           aacaaTAAGCGCCACTATAAAAGCACATTAATTTTACAGCAAATGGTAGAGCAAAATACGATTAAGAATGGCGCGTTTTACCAGCGCAAAAGCGCCGATTGCCGAGCGGTAATCCCCCTCAGACATTACCACCGACAGATTCGTggata                                           >  2:3178/1‑145 (MQ=255)                                                                                                              aaTAAGCGCCACTATAAAAGCACATTAATTTTCCAGCAAATGCTGGAGCAAAATACCGTTGAGCATGGCGCGTTTTACCAGCGCAAAAGCGCCGATTGCCGACCGGTGATCCAGCTCAGAACGTACCACCGGCAGATTAGTGCGAAACg                                        >  1:530369/1‑149 (MQ=255)                                                                                                               aTAAGCGCCACTATAAAAGCACATTAATTTTCCAGCAAATGCTTGAGCAAAATACCGTTGAGCATGGCGCGTTTTACCAGCGCAAAAGCGCCGATTGCCGAGCGGTGATCCAGCTCAGAACGTACCACCGGCAGATTAGTGCGAAACGc                                       <  2:219063/149‑1 (MQ=255)                                                                                                                     gcCACTATAAAAGCACATTAATTTTCCAGCAAATGCTGGAGCAAAATACCGTTGAGCATGGCGCGTTTTACCAGCGCAAAAGCGCCGATTGCCGAGCGGTGATCCAGCTCAGAACGTACCACCGGCAGATTAGTGCGAAACGCCTTCAg                                 >  1:637088/1‑149 (MQ=255)                                                                                                                               aaGCACATTAATTTTCCAGCAAATGCTGGAGCAAAATACCGTTGAGCATGGCGCGTTTTACCAGCGCAAAAGCGCCGATTGCCGAGCGGTGATCCAGCTCAGAACGTACCACCGGCAGATTAGTGCGAAACGCCTTCAGCGCCTGGGTa                       <  2:100517/149‑1 (MQ=255)                                                                                                                                aGCACAGTAATTTTCCAGCAAATGCGGGAGCAAAATACCGTTGAGCATGGCGCGTTTTACCAGCGCAAAAGCGCCGATGGCCGAGCGGTGATCCAGCTCAGAACGTACCACCGGCAGATTAGTGCGAAACGCCTTCAGCGCCTGGGTAt                      <  2:256469/149‑1 (MQ=255)                                                                                                                                     aTTAATTTTCCAGCAAATGCTGGAGCAAAATACCGTTGAGCATGGCGCGTTTTACCAGCGCAAAAGCGCCGATTGCCGAGCGGTGATCCAGCTCAGAACGTACCACCGGCAGATTAGTGCGAAACGCCTTCAGCGCCTGGGTATTAATg                 >  1:618822/1‑149 (MQ=255)                                                                                                                                          ctttGCATCAAATGCGTGAGCAAAATACCGTTGAGCATGGCGCGTTTTACCAGCGCAAAAGCGCCGATTGCCGAGCGGTGATCCAGCTCAGAACGTACCACCGGCAGATTAGTGCGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCt            <  1:15017/148‑1 (MQ=255)                                                                                                                                            ttCCTGCAAATGCTGGTGCAAAATACCGTTGAGCATGACGCGTTTTACCAGCCCAAAAGCGCCTATTGCCGAGCGGTGATCCAGCTCAGAACGTACCAACGGCAGATTAGTGCCAAACGCCTTCAGCGCCTGGGTATTAATGCAGCttt          <  2:303343/149‑1 (MQ=255)                                                                                                                                               cAGCAAATGCTGGAGCAAAATACCGTTGAGCATGGCGCGTTTTACCAGCGCAAAAGCGCCGATTGCCGAGCGGTGATCCAGCTCAGAACGTACCACCGGCAGATTAGTGCGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCaa       >  1:257705/1‑149 (MQ=255)                                                                                                                                                    aaTGCTGGAGCAAAATACCGTGGAGCAGCGCGCGTTTTACCAACGCAAAAGCGCCGATTGCCGAGCGGTGATCCAGCTCAGAACGTACCACCGGCAGATTAGTGCGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCa  <  1:170024/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     TGCAAAAATTCCGCTGCACCCGGTACGGCGACGTTATCGTGCATCAGCACGCCGTCGATATCGCAAATTACATTTTTAATGGTCATGGACTACCCAGAATATTGACAACAATAAGCGCCACTATAAAAGCACATTAATTTTCCAGCAAATGCTGGAGCAAAATACCGTTGAGCATGGCGCGTTTTACCAGCGCAAAAGCGCCGATTGCCGAGCGGTGATCCAGCTCAGAACGTACCACCGGCAGATTAGTGCGAAACGCCTTCAGCGCCTGGGTATTAATGCAGCTTTCAATAGCA  >  NC_000913_3_hsa_tpiA/700241‑700536

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.