New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	= 700388	25 (0.690)	6 (0.170)	5/274	NT	17.2%	coding (1207/1221 nt)	nagC	N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor
	?	NC_000913_3_hsa_tpiA	700983 =	33 (0.920)					coding (612/1221 nt)	nagC	N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor

CCAGCGGTTCGACCTGAATATGGCCAATTTCACCGACGTTGCCGTTGCGGCCAATAAAAATGCGCCCGTTAGAGATAATCCCGGCCCCGGTTCCGCGATGGACACGCACCAGAATGGAGTCTTCGCAATCCTGACTTGCACCGAAGTAGTGCTCCGCCAGCGCCAGACTACGGATATCGTGACCAACGAAACAGGTCACTTTAAAACGTTCTTCCAGAGCTTCTACCAGCCCCCAGTTTTCTACCTGAATATGCGGCATGTAATGAATTTTGCCGCTGTCCGGGTCAA  >  NC_000913_3_hsa_tpiA/700835‑701122                                                                                                                                                     |                                                                                                                                            ccAGCGGTTCGACCTGAATATGGCCAATTTCACCGACGTTGCCGTTGCGGCCAATAAAAATGCGCCCGTTAGAGCTAATCCCGGCCCCGGTTCCGCGATGGACACGCACCAGAATGGAGTCTTCGCAATCCTGACTTGCACCGAcgtag                                                                                                                                             >  2:12264/1‑149 (MQ=255) ccAGCGGTTCGACCTGAATATGGCCAATTTCACCGACGTTGCCGTTGCGGCCAATAAAAATGCGCCCGTTAGAGATAATCCCGGCCCCGGTTCCGCGATGGACACGCACCAGAATGGAGTCTTCGCAGTCCTGACTTGCACCGAagtag                                                                                                                                             >  1:123150/1‑149 (MQ=255)   atcGGTTCGACCTGAATATGGCCAATTTCACCGACGTTGCCGTTGCGGCCAATAAAAATGCGCCCGTTAGAGATAATCCCGGCCCCGGTTCCGCGATGGACACGCACCAGAATGGAGTCTTCGCAATCCTGACTTGCACCGAAGTAGTg                                                                                                                                           <  1:139567/147‑1 (MQ=255)   aGCGTTTCGACCCGAATGTGGCCCATTTCACCGACGTTGCCGTCGCGGCCAAGAAAAATGCGCCCGTTAGAGATGGTCCCGGCCCCGGTTCCGCGATGGACACGCACCAGAATCGAGTCTTCGCAATCCTGACTTGCACCGAAGTAGTg                                                                                                                                           <  2:257705/149‑1 (MQ=255)            aacTGAATATGGCCAATTTCACCGACGTTGCCGTTGCGGCCAATAAAAATGCGCGCGTTAGAGATAATCCCGGCCCCGGTTCCGCGCTGGACATGAATCAGAATGGAGTCTTCGCAATCCTGACTTGCACCGAAGTAGTGCTCcgccag                                                                                                                                  <  2:343957/147‑1 (MQ=255)              cTGAATATGGCCAATTTCACCGACGTTGCCGTTGCGGCCAATAAAAATGCGCCCGTTAGAGATAATCCCGGCCCCGGTTCCGCGATGGACACGCACCAGAATGGAGGCTTCGCAATCCTGACTTGCACCGAAGTAGTGAGCcgccagcg                                                                                                                                >  1:207000/1‑149 (MQ=255)              cTGAATATGGCCAATTTCACCGACGTTGCCGTTGCGGCCAATAAAAATGCGCCCGTTAGAGATAATCCCGGCCCCGGTTCCGCGATGGAACCGCACCAGAATGGAGTCTTCGCAATCCTGCCTTGCACGAAAGTAGTGCTCcgccagcg                                                                                                                                >  2:175510/1‑149 (MQ=255)                      ggCCAATTTCACCGACGTTGCCGTTGCGGCCAATAAAAATGAGCCCGTTAGAGATAATCCCGGCCCCGGCTCCGCGATGGACACGCACCAGAATGGAGTCTTCGCAATCCTGACTTGCACCGAAGTAGTGCTCCGCCAGCGCCACACtc                                                                                                                        >  2:258810/1‑148 (MQ=255)                                 ccGACGTTGCCGTTGCGGCCAATAAAAATGCGCCCGTTAGAGATAATCCCGGCCCCGGTTCCGCGATGGACACGCACCAGAATGGAGTCTTCGCAATCCTGACTTGCACCGAAGTAGTGCTCCGCCAGCGCCAGACTACGGATATCGTg                                                                                                             >  1:669378/1‑149 (MQ=255)                                  ttatcgtgcatcagcacgccgtcgatatcgcaaattacatttttaatggtcatggactacccagaatattgacaacaataagcgccactataaaagcacattaattttccagcaaGTGCTCCGCCAGCGCCAGACTACGGATATCGTGa                                                                                                            <  1:547817‑M2/34‑1 (MQ=255)                                  cGACGTTGCCGTTGCGGCCAATAAAAATGCGCCCGTTAGAGATAATCCCGGCCCCGGTTCCGCGATGGACACGCACCAGAATGGAGTCTTCGCAATCCTGACTTGCACCGAAGTAGTGCTCCGCCAGCGCCAGACTACGGATATCGTGa                                                                                                            <  2:291070/149‑1 (MQ=255)                                       ttgccgttgcGGCCAATAAAAATGCGCCCGTTAGAGATAATCCCGTCCCCGGTTCCGCGATGGACACGCACCAAAAAGGAGACTTCGCAATCCTGACTTGCAACGAAGTAGTGCACCGCCAGCGCCAGACTACGGATATCGTGACCaag                                                                                                       >  1:90155/1‑148 (MQ=255)                                                cGGCCAATAAAAATGCGCCCGTTAGAGATAATCCCGGCCCCGGTTCCGCGATGGACACGCACCAGAATCGAGTCTTCGCAATCCTGACTTGCGCCGAAGTAGTGCTCCGCCAGCGCCAGACTACGGATATCGTGACCAACGAAACAGGt                                                                                              <  1:197079/149‑1 (MQ=255)                                                  gCCAATAAAAATGCGCCCGTTAGAGATAATCCCGGCCCCGGTTCCGCGATGGACACGCACCAGAATGGAGTCTTCGCAATCCTGACTTGCACCGAAGTAGTGCTCCGCCAGCGCCAGACTACGGATATCGTGACCAACGAAACAGGTCa                                                                                            >  1:146267/1‑149 (MQ=255)                                                     cgtcgatatcgcaaattacatttttaatggtcatggactacccagaatattgacaacaataagcgccactataaaagcacattaattttccagcaaGTGCTCCGCCAGCGCCAGACTACGGATATCGTGACCAACGAAACAGGTCACtt                                                                                         >  2:556871‑M2/97‑149 (MQ=255)                                                            aTGCGCCCGTTAGAGATAATCCCGGCCCCGGTTCCGCGATGGACACGCACCAGAATGGAGTCTTCGCAATCCTGACTTGCACCGAAGTAGTGCTCCGCCAGCGCCAGACTACGGATATCGTGATCAACGAAACAGGTCACTTTAAAACg                                                                                  >  2:374864/1‑149 (MQ=255)                                                                  tcGTAAGAGAGAATCCCGGCCGCGGTTCCGCAATGGAAACGCACCAGAATGGAGTCTTCGCAATACTGACTTGCACCGAAGTAGTGCTCCGCCAGCGCCAGACTACGGATATCGTGACCAACGAAACAGGTCACTTTAAAACGttctca                                                                            <  2:637088/148‑3 (MQ=255)                                                                  ccGTTAGAGATAATCCCGGCCCCGGTTCCGCGATGGACACGCACCAGAATGGAGTCTTCGCAATCCTGACTTGCACCGAAGTAGTGCTCCGCCAGCGCCAGACTACGGATATCGTGACCAACGAAACAGGTCACTTTAAAACGttcttc                                                                            >  1:613830/1‑149 (MQ=255)                                                                        gagaTAATCCCGGCCCCGGTTCCGCGATGGACACGCACCAGAATGGAGTCTTCGCAATCCTGACTTGCACCGAAGTAGTGCTCCGCCAGCGCCAGACTACGGATATCGTGACCAACGAAACAGGTCACTTTAAAACGTTCTTCCAGAGc                                                                      <  2:515671/149‑1 (MQ=255)                                                                         agaTAATCCCGGCCCCGGTTCCGCGATGGACACGCACCAGAATGGAGTCTTCGCAATCCTGAATTGCACCAAAGTAGTGCTCCGCCAGCGCCAGACTACGGATATCGTGACCAACGAAACAGGTCACTTTAAAACGACCTTCCAGAGCt                                                                     >  1:400291/1‑149 (MQ=255)                                                                          gaTAATCCCGGCCCCGGTTCCGCGATGGACACGCACCAGAATGGAGTCTTCGCAATCCTGACTTACACCGAAGTAGTGCTCTTCCAGCGCCAGACTACGGATCTCGTGACCAACGAAACAGGTCACTTTAAAACGTTCTTCCAGAGCtt                                                                    <  1:621813/149‑1 (MQ=255)                                                                            ttaatggtcatggactacccagaatattgacaacaataagcgccactataacagcacattaattttccagcaaGTGCTCCGCCAGCGCCAGACTACGGATATCGTGACCTACGAAACAGCTCCCTTTAAACCGATCTACTAGACCctct                                                                  >  2:90421‑M2/74‑149 (MQ=255)                                                                            ttaatggtcagggaatccccagaatattgacaacaataagcgcctctataaaagcacattacttttccagcaaGTGCTCCGCCAGCGCCAGACTACGGATATCGTTACCAACGAAACAGCTCACTCTAAAAGCTTCTTCCCGAGCTTCt                                                                  >  2:90291‑M2/74‑149 (MQ=255)                                                                              attccGGCCCCGGTTCCGCGATTGAAACGCACTAGAATGGGGTTTTCGCAACCCTGACTGGCAGCGAAGTAGTGCTCCGCCAGCGCCAGACTACGGATATCGTGACCATCGAAACAGGGCACTTTATAACGTTCTTCCAGAGCTTCTAc                                                                <  2:655181/146‑1 (MQ=255)                                                                                       ccGGTTCCGCGATGGGCACGCACCAGAACGGAGTCTTCGCAATCCTGACTTTCACCGAAGTAGTGCACCGCCAGCGCCCGACTACGGATATCGTGCCCAACACAACAGGTCACGTTAAACCGTTCTTCCATAGCTCCGCCCAGCCCCCa                                                       >  2:139586/1‑149 (MQ=255)                                                                                         actacccagaatattgacaacaataagcgccactataaaagcacattaattttccagcaaGTGCTCCGCCAGCGCCAGACTACGGATATCGTGACCAACGAAACAGGTCACTTTAAAACGTTCTTCCAGAGCTTCTACCAGCCCCCAGt                                                     >  1:388185‑M2/61‑149 (MQ=255)                                                                                            acccagaatattgacaacaataagcgctactataaaagcacattaatcttccagcaaGTGCTCCGCCAGCGCCAGACTACGGATATCGTGACCAACGAAACAGGTCACTTTAAAACGTTCTTCCAGAGCTTCTACCAGCCCCCAGtttt                                                  <  2:235775‑M2/92‑1 (MQ=255)                                                                                              cgcgATGGACACGCCCCAGAATGGAGTCTTCGCAATCCTGACTTGCACCGAAGTACTGCTCCGCCAGCGCCAGACTACGGATATCGTGACCAACGAAACAGGCCACTTCACAACGTTCTTCCAGAGCTTCTACCCGCACCCAGCTTTCt                                                >  1:657268/1‑149 (MQ=255)                                                                                                 gATGGACACGCACCAGAATGGAGTCTTCGCAATCCTGACTTGCACCGAAGTAGTGCTCCGCCAGCGCCAGACTACGGATATCGTGACCAACGAAATAGGTCACTTTAAAACGTTCTTCCAGAGCTTCTACCAG‑CCCCAGTTTTCTACCt                                            <  1:447774/149‑1 (MQ=255)                                                                                                  aTGGACACGCACCAGAATGGAGGCTTCGCAACCCTGACTTGCACCGAAGTAGTGCTCCGCCAGCGCCAGACTACGGATATCGTGACCAACGAAACAGGTCACTTTAAAACGTTCTTCCAGAGCTTCTACCAGCCCCCAGTTTTCTACCt                                            <  1:194114/149‑1 (MQ=255)                                                                                                          gCACCAGAATGGAGTCTTCGCAATCCTGACTTGCACCGAAGTAGTGCTCCGCCAGCGCCAGACTACGGATATCGTGACCAACGAAACAGGTCACTTTAAAACGTTCTTCCAGAGCTTCTACCAGCCCCCAGTTTTCTACCTGAATATGc                                    <  2:582062/149‑1 (MQ=255)                                                                                                           caccacAATGGACTCCTCGCAATCCTGCCTTTCACCGGATTAGGGCTCCGCCAGCCCCAGACTACGGATATCGTGACCCACGAAACAGGTCACTTTAAAACGTTCTTCCAGCGCTTCTACCAGCCCCCAGTTTTCTACCTGAATATGCg                                   <  2:618822/149‑1 (MQ=255)                                                                                                           cACCAGAACGGAGTCTTCGCAATCCGGACTTGCACCGAAGTAGTGCTCCGCCAGCGCCAGACTACGGATATCGTGACCAACGAAACAGGTCACTTTAAAACGTTCTTCCAGAGCTTCTACCAGCCCCCAGTTTTCTACCTGAATATGCg                                   <  2:569883/149‑1 (MQ=255)                                                                                                             ccAGAATGGAGTCTTCGCAATCCTGACTTGCACCGAAGTAGTGCTCCGCCAGCGCCAGACTACGGATATCGTGACCAACGAAACAGGTCACTTTAAAACGTTCTTCCAGAGCTTCTACCAGCCACCAGTTTTCTACCTGACTATGCGGc                                 >  2:533454/1‑149 (MQ=255)                                                                                                                   tGGAGTCTTCGCAATCCTGACTTGCACCGAAGTAGTGCTCCGCCAGCGCCAGACTACGGATATCGTGACCAACGAAACCGGTCACTTTAAAACGTTCTCCCAGAGCTTCTACCAGCCCCCAGTTTTCTACCTGAATATGCGGCATGtca                           <  1:217124/149‑3 (MQ=255)                                                                                                                   tGGAGTCTTCGCAATCCTGACTTGCACCGAAGTAGTGCTCCGCCAGCGCCAGACTACGGATATCGTGACCAACGAAACAGGTCACTTTAAAACGTTCTTCCAGAGTTTCTACCAGCCCCCAGTTTTCTACCTGAATATGCGGCATGTaa                           <  2:8820/149‑1 (MQ=255)                                                                                                                        gtttCGCAATCCGGTTTTTCCACTAAGTTGTGTTCCGCTAGCGACAGACTATGGATATCGTGACCAACGAAACAAGTCCCTTTAATACGTTCTTCCAGAGCTTCTACCAGCCCCCAGTTTTTTACCTGAATCTGCGGCATGTAATGAAt                      <  2:189314/147‑1 (MQ=255)                                                                                                                             gCAATCCTGACTTGCACCGAAGTAGTGCTCCGCCAGCGCCAGACTACGGATATCGTGACCAACGAAACAGGTCACTTTAAAACGTTCTTCCAGAGCTTCTACCAGCCCCCAGTTTTCTACCTGAATATGCGGCATGTAATGAATTTTGc                 >  1:212759/1‑149 (MQ=255)                                                                                                                                      aCTTGCACCGAAGTAGTGCTCCGCCAGCGCCAGACTACGGATATCGTGACCAACGAAACAGGTCACTTTAAAACGTTCTTCCAGAGCTTCTACCAGCCCCCAGTTTTCTACCTGAATATGCACAATGTAATGAACTTTGCCCCTGTCCg        >  2:548015/1‑149 (MQ=255)                                                                                                                                       cTTGCAACGAAGTAGGGCTCCGCCAGCGGCAGACTACGGATATCGTGACCAACGAAACAGGTCACTTTAAAACGTTCTTCCAGAGCTTCTACCAGCCCCCAGTTTTCTACCTGAATATGCGGCATGTAATGAATTTTGCCGCTGTCCgg       <  2:123150/149‑1 (MQ=255)                                                                                                                                         tGCACCCAAGTAGTGCTCCGCCAGCGCCAGACTACGGATATCGTGACCAACGAAACAGGTCACTTTAAAACGTTCTTCCAGAGCTTCTACCAGCCCCCAGTTTTCTACCTGAATATGCGGCATGTAATGAATTTTGCCGCTGTCCGGGt     <  1:257016/149‑1 (MQ=255)                                                                                                                                           cACCGAAGTAGTGCTCCGCCAGCGCCAGACTACGGATATCGTGACCAACGAAACAGGTCACTTTAAAACGTTCTTCCAGAGCTTCTACCAGCCCCCAGTTTTCTACCTGAATATGCGGCATGTAATGAATTTTGCCGCTGTCCGGGTca   >  1:309983/1‑149 (MQ=255)                                                                                                                                            aCCGAAGTAGTGCTCCGCCAGCGCCAGACTACGGATATCGTGACCAACGAAACAGGTCACTTTAAAACGTTCTTCCAGAGCTTCTACCAGCCCCCAGTTTTCTACCTGAATATGCGGCATGTAATGAATTTTGCCGCTGTCCGGGTcaa  >  1:408182/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                            CCAGCGGTTCGACCTGAATATGGCCAATTTCACCGACGTTGCCGTTGCGGCCAATAAAAATGCGCCCGTTAGAGATAATCCCGGCCCCGGTTCCGCGATGGACACGCACCAGAATGGAGTCTTCGCAATCCTGACTTGCACCGAAGTAGTGCTCCGCCAGCGCCAGACTACGGATATCGTGACCAACGAAACAGGTCACTTTAAAACGTTCTTCCAGAGCTTCTACCAGCCCCCAGTTTTCTACCTGAATATGCGGCATGTAATGAATTTTGCCGCTGTCCGGGTCAA  >  NC_000913_3_hsa_tpiA/700835‑701122

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.