New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	2071331 =	49 (1.160)	5 (0.130)	5/266	5.0	10.6%	noncoding (15/195 nt)	isrC	novel sRNA, CP4‑44; putative prophage remnant
	?	NC_000913_3_hsa_tpiA	2071358 =	39 (0.990)					noncoding (42/195 nt)	isrC	novel sRNA, CP4‑44; putative prophage remnant
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TATGGAACTGGATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCT  >  NC_000913_3_hsa_tpiA/2071189‑2071471                                                                                                                                               |                                                                                                                                             tATGGAACTGGATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTatcga                                                                                                                                        >  2:70931/1‑149 (MQ=255) tATGGAACTGGATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTatcga                                                                                                                                        >  2:329802/1‑149 (MQ=255)   tGGAACTGGATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTatcgatc                                                                                                                                      >  1:544757/1‑149 (MQ=255)      aaCTGGATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCTTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGtt                                                                                                                                   <  1:303205/149‑1 (MQ=255)      aaCTGGATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGtt                                                                                                                                   <  1:329802/149‑1 (MQ=255)        cTGGATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTta                                                                                                                                 <  2:632872/149‑1 (MQ=255)        cTGGATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTta                                                                                                                                 >  1:655044/1‑149 (MQ=255)           gATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGATCACTATTGGAAGAAAACGATCAATATCTATTTTATCGATCGTTTatat                                                                                                                              >  2:520273/1‑149 (MQ=255)                tcttctGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATatcgatc                                                                                                                         <  1:488442/149‑1 (MQ=255)                   tctGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATcgatcgat                                                                                                                      >  2:382200/1‑149 (MQ=255)                     tGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATaa                                                                                                                    <  2:544757/149‑1 (MQ=255)                     tGAACCTGTCGTGACTGATGCCCACCCTGACTCTGAGTCTGCTCACAAAAGCACTTTTTTCGTTACTGTCTCTCATGTCCGTGCATTAGCCCAATAATAGAATACAACGCTCACTCTCTATTTTATCGATCGTTTAGATCACTCAATaa                                                                                                                    >  2:58611/1‑149 (MQ=255)                     tGAACCTGTCGGGCCTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATaa                                                                                                                    <  2:188927/149‑1 (MQ=255)                           tGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCtaat                                                                                                              <  2:589131/149‑1 (MQ=255)                            gTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATCGCATCCAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCtaata                                                                                                             >  1:571529/1‑149 (MQ=255)                            gTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCtaata                                                                                                             <  1:555734/149‑1 (MQ=255)                                     gATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCttt                                                                                                    <  1:382200/149‑1 (MQ=255)                                       ttccctccctGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGt                                                                                                  <  2:19549/147‑1 (MQ=255)                                       tGCCCTCCCTGACTCTGACTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAACACGATCACTATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGt                                                                                                  <  1:482397/149‑1 (MQ=255)                                        gCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTTTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTc                                                                                                 <  1:682388/149‑1 (MQ=255)                                         ccctccctGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATTGCTAGTGTATATCGATCGATAAGCTAATAATAACCTTTGTCa                                                                                                >  1:137117/1‑149 (MQ=255)                                         ccctccctGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCa                                                                                                >  1:40536/1‑149 (MQ=255)                                           ctccctGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTTTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCCATCACTAAGCTAAAAATAACAtttttaagg                                                                                              >  2:208512/1‑143 (MQ=255)                                            tccctGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCt                                                                                                      <  2:417859/140‑1 (MQ=255)                                            tccctGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCt                                                                                                      >  1:417859/1‑140 (MQ=255)                                                    tctGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGcac                                                                                     >  2:337144/1‑149 (MQ=255)                                                    tctGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGcac                                                                                     >  1:421169/1‑149 (MQ=255)                                                       gAGTCTGCTCACAAAAGCACTTTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGa                                                                                  <  1:70931/149‑1 (MQ=255)                                                        aGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAAGATGTACAGAt                                                                                 <  2:457206/149‑1 (MQ=255)                                                          tCTGCCCACAAAAGCACTGTTTACGTTACTGCATTTCTGCTCCTGGCAATAGTTCAATAACAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATAc                                                                               <  1:503215/149‑1 (MQ=255)                                                             gCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTa                                                                            <  1:63799/149‑1 (MQ=255)                                                                   aaaaGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGaaa                                                                      <  1:382923/149‑1 (MQ=255)                                                                       gCACTGTTTTCGTTATTGTCTCTCTTGTTCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACa                                                                  <  1:227887/149‑1 (MQ=255)                                                                       gCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACa                                                                  >  2:707739/1‑149 (MQ=255)                                                                             ttttCGTTCCTGCCTCTCTTGTCCGTGCAATAGCTGAATAATAGGATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAgg                                                            <  2:168494/149‑1 (MQ=255)                                                                                   ttACTGTCTCTCTGGTCCGGGCAATAGCTCAATAATAGAATAAAACGATCAAGATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGaacaa                                                      <  1:152000/149‑1 (MQ=255)                                                                                       tGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTTACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGa                                                  >  2:644710/1‑149 (MQ=255)                                                                                        ttctctcTTCTCCGTGCAATAGCTCAATAATAGAATAAAACAATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGaa                                                 <  1:280089/148‑1 (MQ=255)                                                                                                  tCCGTGCAATATGTCAACAATAGAACAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCa                                       <  2:114399/149‑1 (MQ=255)                                                                                                          gtcgttCAATAAGAGAATAAAACGATCAATATCTATTTTATCTATCTTGTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACTTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTcc                               <  2:571529/144‑1 (MQ=255)                                                                                                          aTAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTcc                               >  1:480414/1‑149 (MQ=255)                                                                                                          aTAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTcc                               <  2:491892/149‑1 (MQ=255)                                                                                                              cTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGACCAGATCCGTACAGAAAAACATTCAGGGACCCACAGACCCACAATCACGAAACTACcaca                           >  2:409969/1‑149 (MQ=255)                                                                                                               tCAATAATAGGATAAAACGATCACTATCTATTATATCGATCGTTTATATCGATCGATAAGCTAAAAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAAACACAATTCAGAAACTCCCACAg                          >  1:578499/1‑149 (MQ=255)                                                                                                                 aataatAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGcc                        <  1:219479/149‑1 (MQ=255)                                                                                                                   taataGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCgg                      <  1:337144/149‑1 (MQ=255)                                                                                                                      taGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTAAGAAACTCCCACAGCCGGAcc                   >  2:128460/1‑149 (MQ=255)                                                                                                                              accGAGCAATTTCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTTAGTAACATGCACAGATACGTACAGAAAGATATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCAc           <  2:585660/147‑1 (MQ=255)                                                                                                                                       tatCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGCAACATAGATGCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCt  >  1:392106/1‑149 (MQ=255)                                                                                                                                               |                                                                                                                                             TATGGAACTGGATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCT  >  NC_000913_3_hsa_tpiA/2071189‑2071471

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.