New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	2071331 =	49 (1.160)	5 (0.130)	5/266	5.0	10.6%	noncoding (15/195 nt)	isrC	novel sRNA, CP4‑44; putative prophage remnant
	?	NC_000913_3_hsa_tpiA	2071358 =	39 (0.990)					noncoding (42/195 nt)	isrC	novel sRNA, CP4‑44; putative prophage remnant
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGGGTACCG  >  NC_000913_3_hsa_tpiA/2071215‑2071503                                                                                                                                                |                                                                                                                                                  tGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCtaat                                                                                                                                              <  2:589131/149‑1 (MQ=255)  gTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATCGCATCCAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCtaata                                                                                                                                             >  1:571529/1‑149 (MQ=255)  gTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCtaata                                                                                                                                             <  1:555734/149‑1 (MQ=255)           gATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCttt                                                                                                                                    <  1:382200/149‑1 (MQ=255)             ttccctccctGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGt                                                                                                                                  <  2:19549/147‑1 (MQ=255)             tGCCCTCCCTGACTCTGACTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAACACGATCACTATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGt                                                                                                                                  <  1:482397/149‑1 (MQ=255)              gCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTTTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTc                                                                                                                                 <  1:682388/149‑1 (MQ=255)               ccctccctGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATTGCTAGTGTATATCGATCGATAAGCTAATAATAACCTTTGTCa                                                                                                                                >  1:137117/1‑149 (MQ=255)               ccctccctGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCa                                                                                                                                >  1:40536/1‑149 (MQ=255)                 ctccctGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTTTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCCATCACTAAGCTAAAAATAACAtttttaagg                                                                                                                              >  2:208512/1‑143 (MQ=255)                  tccctGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCt                                                                                                                                      <  2:417859/140‑1 (MQ=255)                  tccctGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCt                                                                                                                                      >  1:417859/1‑140 (MQ=255)                          tctGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGcac                                                                                                                     >  2:337144/1‑149 (MQ=255)                          tctGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGcac                                                                                                                     >  1:421169/1‑149 (MQ=255)                             gAGTCTGCTCACAAAAGCACTTTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGa                                                                                                                  <  1:70931/149‑1 (MQ=255)                              aGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAAGATGTACAGAt                                                                                                                 <  2:457206/149‑1 (MQ=255)                                tCTGCCCACAAAAGCACTGTTTACGTTACTGCATTTCTGCTCCTGGCAATAGTTCAATAACAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATAc                                                                                                               <  1:503215/149‑1 (MQ=255)                                   gCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTa                                                                                                            <  1:63799/149‑1 (MQ=255)                                         aaaaGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGaaa                                                                                                      <  1:382923/149‑1 (MQ=255)                                             gCACTGTTTTCGTTATTGTCTCTCTTGTTCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACa                                                                                                  <  1:227887/149‑1 (MQ=255)                                             gCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACa                                                                                                  >  2:707739/1‑149 (MQ=255)                                                   ttttCGTTCCTGCCTCTCTTGTCCGTGCAATAGCTGAATAATAGGATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAgg                                                                                            <  2:168494/149‑1 (MQ=255)                                                         ttACTGTCTCTCTGGTCCGGGCAATAGCTCAATAATAGAATAAAACGATCAAGATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGaacaa                                                                                      <  1:152000/149‑1 (MQ=255)                                                             tGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTTACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGa                                                                                  >  2:644710/1‑149 (MQ=255)                                                              ttctctcTTCTCCGTGCAATAGCTCAATAATAGAATAAAACAATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGaa                                                                                 <  1:280089/148‑1 (MQ=255)                                                                        tCCGTGCAATATGTCAACAATAGAACAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCa                                                                       <  2:114399/149‑1 (MQ=255)                                                                                gtcgttCAATAAGAGAATAAAACGATCAATATCTATTTTATCTATCTTGTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACTTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTcc                                                               <  2:571529/144‑1 (MQ=255)                                                                                aTAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTcc                                                               <  2:491892/149‑1 (MQ=255)                                                                                aTAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTcc                                                               >  1:480414/1‑149 (MQ=255)                                                                                    cTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGACCAGATCCGTACAGAAAAACATTCAGGGACCCACAGACCCACAATCACGAAACTACcaca                                                           >  2:409969/1‑149 (MQ=255)                                                                                     tCAATAATAGGATAAAACGATCACTATCTATTATATCGATCGTTTATATCGATCGATAAGCTAAAAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAAACACAATTCAGAAACTCCCACAg                                                          >  1:578499/1‑149 (MQ=255)                                                                                       aataatAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGcc                                                        <  1:219479/149‑1 (MQ=255)                                                                                         taataGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCgg                                                      <  1:337144/149‑1 (MQ=255)                                                                                            taGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTAAGAAACTCCCACAGCCGGAcc                                                   >  2:128460/1‑149 (MQ=255)                                                                                                    accGAGCAATTTCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTTAGTAACATGCACAGATACGTACAGAAAGATATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCAc                                           <  2:585660/147‑1 (MQ=255)                                                                                                             tatCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGCAACATAGATGCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCt                                  >  1:392106/1‑149 (MQ=255)                                                                                                                     taatcgatcgTTTATATCGATCGACAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGc                          <  1:244799/147‑1 (MQ=255)                                                                                                                       atcgatcgTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGccc                        <  2:480414/149‑2 (MQ=255)                                                                                                                            tcgTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATc                   >  2:566536/1‑149 (MQ=255)                                                                                                                                      cgatcgatAAGCAAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTtgtg         <  1:520273/149‑1 (MQ=255)                                                                                                                                        atcgatAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTggg       >  1:122100/1‑149 (MQ=255)                                                                                                                                             tAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGGGTACCg  >  1:401310/1‑149 (MQ=255)                                                                                                                                             tAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGGGTACCg  >  1:351541/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                  TGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAAACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGCCGGTATCCACGTTTGTGGGTACCG  >  NC_000913_3_hsa_tpiA/2071215‑2071503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.