New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	3248531 =	43 (0.920)	6 (0.140)	6/264	5.1	12.8%	coding (93/384 nt)	mzrA	modulator of EnvZ/OmpR regulon
	?	NC_000913_3_hsa_tpiA	3248557 =	41 (0.930)					coding (119/384 nt)	mzrA	modulator of EnvZ/OmpR regulon
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTCAAAAGTATCACCCCCAAAAACGACACTCTGTTAATTACATTT  >  NC_000913_3_hsa_tpiA/3248388‑3248678                                                                                                                                                |                                                                                                                                                    ggTTCGCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCa                                                                                                                                                <  1:706783/149‑1 (MQ=255)  gTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAg                                                                                                                                               <  1:749545/149‑1 (MQ=255)     ctctGGTCTTGTGACGGAAAGAGAAGCGGGGAAACCGGGGGGAAGGGATGCAAATACCTCGCATGTCGCTTCGCCATCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCaa                                                                                                                                            <  1:150584/149‑1 (MQ=255)       ctGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAaga                                                                                                                                          <  2:318828/149‑1 (MQ=255)         ggTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGt                                                                                                                                        <  1:477892/149‑1 (MQ=255)                  aTGGAAAAAGAAATATGGAAATCGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAATAGTCTACGCTgg                                                                                                                               >  2:410947/1‑149 (MQ=255)                    ggAAAAAGAAATATGGAAATCGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCg                                                                                                                             >  1:341607/1‑149 (MQ=255)                      aaaaaGAAATATGGAAATCGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGAt                                                                                                                           <  1:416654/149‑1 (MQ=255)                       aaaaGAAATATGGAAATCGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGAtt                                                                                                                          >  1:554727/1‑149 (MQ=255)                        aaaGAAATATGGAAATCGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTc                                                                                                                         >  2:341419/1‑149 (MQ=255)                          aGAAATATGGAAATCGGGGGTAAGGGATGCAAATCCCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTGCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGt                                                                                                                       <  1:323764/149‑1 (MQ=255)                            aaaTATGGAAATCGGGGGTAAGGCATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGc                                                                                                                     <  1:672534/149‑1 (MQ=255)                              atatGGATATCGGGGGTAAGGGATGAAAATACCTCCCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCg                                                                                                                   <  2:341607/149‑1 (MQ=255)                                  ggAAATCGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTtca                                                                                                               >  1:784418/1‑149 (MQ=255)                                       tCGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAg                                                                                                          <  1:213980/149‑1 (MQ=255)                                        tggaggTAAGGTATGCAAGTACCTCGCATTTCGTTTCGCTAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAgg                                                                                                         <  2:165212/145‑1 (MQ=255)                                        cGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAgg                                                                                                         <  2:814378/149‑1 (MQ=255)                                            ggTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGTTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGcacc                                                                                                     >  1:197329/1‑148 (MQ=255)                                                 gggATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTAGGCACGCGGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGAt                                                                                                <  2:711118/149‑1 (MQ=255)                                                  ggATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAACGCACCACGATg                                                                                               >  1:430930/1‑149 (MQ=255)                                                     tGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCa                                                                                            <  1:485232/149‑1 (MQ=255)                                                       cAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGa                                                                                          <  1:254987/149‑1 (MQ=255)                                                         aaTTCCTCGCATGTCGCTTGGCCAGCTAGCCTGGTCCGGGGCTGTTTTACTTCTGGTCGGTATGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACg                                                                                        <  2:569594/149‑1 (MQ=255)                                                         aaTACCTCGCATGTCGCTTCGCCCGATAGCATAATCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACg                                                                                        >  2:594540/1‑149 (MQ=255)                                                               tCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCCCAAAGATGCCAGACGGttttt                                                                                  >  1:125784/1‑149 (MQ=255)                                                                    tGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTTGTCGGCAGGGTGTTCCGGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATc                                                                             <  2:149810/149‑1 (MQ=255)                                                                       cGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTgg                                                                          <  1:512999/149‑1 (MQ=255)                                                                                aGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCCCCtt                                                                 >  2:187232/1‑149 (MQ=255)                                                                                   tAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGAc                                                              >  1:5332/1‑149 (MQ=255)                                                                                   tAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGAc                                                              <  1:341419/149‑1 (MQ=255)                                                                                   tAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATAAAAGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTgcc                                                              >  1:21274/1‑147 (MQ=255)                                                                                       cTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTGGACAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTc                                                          >  2:302350/1‑149 (MQ=255)                                                                                                    gTTTTACTTCTGGTCGGCACCCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCttt                                             <  2:548813/149‑1 (MQ=255)                                                                                                     ttttACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTc                                            >  2:774200/1‑149 (MQ=255)                                                                                                       ttACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTCaa                                          >  1:592633/1‑149 (MQ=255)                                                                                                                 tCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTCAAAAGTATCAcc                                <  2:5332/149‑1 (MQ=255)                                                                                                                    gCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTCAAAAGTATCAccccc                             >  2:467247/1‑149 (MQ=255)                                                                                                                    gCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTCAAAAGTATCAccccc                             >  2:594733/1‑149 (MQ=255)                                                                                                                      aCGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTCAAAAGTATCACCCCCaa                           >  1:311703/1‑149 (MQ=255)                                                                                                                           gTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTCAAAAGTATCACCCCCAAAAACg                      >  1:324690/1‑149 (MQ=255)                                                                                                                                   ccTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTCAAAAGTATCACCCCCAAAAACGACACTCTg              <  1:594733/149‑1 (MQ=255)                                                                                                                                       gTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTCAAAAGTATCACCCCCAAAAACGACACTCTGTTaa          <  2:507110/149‑1 (MQ=255)                                                                                                                                               ttCCCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTCAAAAGTATCACCCCCAAAAACGACACTCTGTTAATTACAttt  <  1:252661/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                    GGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTCAAAAGTATCACCCCCAAAAACGACACTCTGTTAATTACATTT  >  NC_000913_3_hsa_tpiA/3248388‑3248678

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.