New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_tpiA	3248531 =	43 (0.920)	6 (0.140)	6/264	5.1	12.8%	coding (93/384 nt)	mzrA	modulator of EnvZ/OmpR regulon
	?	NC_000913_3_hsa_tpiA	3248557 =	41 (0.930)					coding (119/384 nt)	mzrA	modulator of EnvZ/OmpR regulon
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAAAAGAAATATGGAAATCGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTCAAAAGTATCACCCCCAAAAACGACACTCTGTTAATTACATTTGACTCCAGCGACCAGAGCGCC  >  NC_000913_3_hsa_tpiA/3248409‑3248699                                                                                                                                                     |                                                                                                                                               aaaaaGAAATATGGAAATCGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGAt                                                                                                                                                <  1:416654/149‑1 (MQ=255)  aaaaGAAATATGGAAATCGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGAtt                                                                                                                                               >  1:554727/1‑149 (MQ=255)   aaaGAAATATGGAAATCGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTc                                                                                                                                              >  2:341419/1‑149 (MQ=255)     aGAAATATGGAAATCGGGGGTAAGGGATGCAAATCCCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTGCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGt                                                                                                                                            <  1:323764/149‑1 (MQ=255)       aaaTATGGAAATCGGGGGTAAGGCATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGc                                                                                                                                          <  1:672534/149‑1 (MQ=255)         atatGGATATCGGGGGTAAGGGATGAAAATACCTCCCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCg                                                                                                                                        <  2:341607/149‑1 (MQ=255)             ggAAATCGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTtca                                                                                                                                    >  1:784418/1‑149 (MQ=255)                  tCGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAg                                                                                                                               <  1:213980/149‑1 (MQ=255)                   tggaggTAAGGTATGCAAGTACCTCGCATTTCGTTTCGCTAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAgg                                                                                                                              <  2:165212/145‑1 (MQ=255)                   cGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAgg                                                                                                                              <  2:814378/149‑1 (MQ=255)                       ggTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGTTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGcacc                                                                                                                          >  1:197329/1‑148 (MQ=255)                            gggATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTAGGCACGCGGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGAt                                                                                                                     <  2:711118/149‑1 (MQ=255)                             ggATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAACGCACCACGATg                                                                                                                    >  1:430930/1‑149 (MQ=255)                                tGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCa                                                                                                                 <  1:485232/149‑1 (MQ=255)                                  cAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGa                                                                                                               <  1:254987/149‑1 (MQ=255)                                    aaTTCCTCGCATGTCGCTTGGCCAGCTAGCCTGGTCCGGGGCTGTTTTACTTCTGGTCGGTATGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACg                                                                                                             <  2:569594/149‑1 (MQ=255)                                    aaTACCTCGCATGTCGCTTCGCCCGATAGCATAATCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACg                                                                                                             >  2:594540/1‑149 (MQ=255)                                          tCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCCCAAAGATGCCAGACGGttttt                                                                                                       >  1:125784/1‑149 (MQ=255)                                               tGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTTGTCGGCAGGGTGTTCCGGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATc                                                                                                  <  2:149810/149‑1 (MQ=255)                                                  cGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTgg                                                                                               <  1:512999/149‑1 (MQ=255)                                                           aGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCCCCtt                                                                                      >  2:187232/1‑149 (MQ=255)                                                              tAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGAc                                                                                   >  1:5332/1‑149 (MQ=255)                                                              tAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGAc                                                                                   <  1:341419/149‑1 (MQ=255)                                                              tAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATAAAAGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTgcc                                                                                   >  1:21274/1‑147 (MQ=255)                                                                  cTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTGGACAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTc                                                                               >  2:302350/1‑149 (MQ=255)                                                                               gTTTTACTTCTGGTCGGCACCCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCttt                                                                  <  2:548813/149‑1 (MQ=255)                                                                                ttttACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTc                                                                 >  2:774200/1‑149 (MQ=255)                                                                                  ttACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTCaa                                                               >  1:592633/1‑149 (MQ=255)                                                                                            tCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTCAAAAGTATCAcc                                                     <  2:5332/149‑1 (MQ=255)                                                                                               gCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTCAAAAGTATCAccccc                                                  >  2:467247/1‑149 (MQ=255)                                                                                               gCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTCAAAAGTATCAccccc                                                  >  2:594733/1‑149 (MQ=255)                                                                                                 aCGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTCAAAAGTATCACCCCCaa                                                >  1:311703/1‑149 (MQ=255)                                                                                                      gTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTCAAAAGTATCACCCCCAAAAACg                                           >  1:324690/1‑149 (MQ=255)                                                                                                              ccTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTCAAAAGTATCACCCCCAAAAACGACACTCTg                                   <  1:594733/149‑1 (MQ=255)                                                                                                                  gTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTCAAAAGTATCACCCCCAAAAACGACACTCTGTTaa                               <  2:507110/149‑1 (MQ=255)                                                                                                                          ttCCCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTCAAAAGTATCACCCCCAAAAACGACACTCTGTTAATTACAttt                       <  1:252661/149‑1 (MQ=255)                                                                                                                              ccAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTCAAAAGTATCACCCCCAAAAACGACACTCTGTTAATTACATTTGACt                   >  2:135145/1‑149 (MQ=255)                                                                                                                                aGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTCAAAAGTATCACCCCCAAAAACGACACTCTGTTAATTACATTTGAATct                 >  1:767030/1‑148 (MQ=255)                                                                                                                                        tCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTCAAAAGTATCACCCCCAAAAACGACACTCTGTTAATTACATTTGACTCCAGCGACCa         <  2:324690/149‑1 (MQ=255)                                                                                                                                          tACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTCAAAAGTATCACCCCCAAAAACGACGCTCTGTTAATTACATTTGACTCCAGCGACCaga       <  2:592633/149‑1 (MQ=255)                                                                                                                                          tACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTCAAAAGTATCACCCCCAAAAACGACACTCTGTTAATTACATTTGACTCCAGCGACCaga       <  1:467247/149‑1 (MQ=255)                                                                                                                                               tGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGGTTTTCAATCTGGCATAACATCTACGCTCACTGCATTCCTTTCACAAGTATCACCCCCAAAAACGACACTCTGTTAATTACATTTGACTCCAAAGACGAGACcgcc  >  1:158028/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                               AAAAAGAAATATGGAAATCGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTGGTCCGCGGTTCGCCAGCAAGAGTCTACGCTGGCGATTCGTGCCGTTCATCAAGGCACAACGATGCCAGACGGTTTTTCAATCTGGCATCACCTTGACGCTCATGGCATTCCTTTCAAAAGTATCACCCCCAAAAACGACACTCTGTTAATTACATTTGACTCCAGCGACCAGAGCGCC  >  NC_000913_3_hsa_tpiA/3248409‑3248699

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.