New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	2071331 =	75 (1.550)	4 (0.090)	4/270	6.7	5.3%	noncoding (15/195 nt)	isrC	novel sRNA, CP4‑44; putative prophage remnant
	?	NC_000913_3_pae_tpiA	2071358 =	73 (1.620)					noncoding (42/195 nt)	isrC	novel sRNA, CP4‑44; putative prophage remnant
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGGTATGGAACTGGATTTTCTTCTGAACCTGTCGTGAC‑TGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAA‑ACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGC  >  NC_000913_3_pae_tpiA/2071186‑2071479                                                                                                                                                   |                                                                                                                                                      ccgtacagAACTGGACCTGCTTCTGAACCTGTCCTGCC‑TGATGCACTACCTGGCTCTCAGTCTGCTCACAAAAGCACTGTTTTCGTTACTTTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTat                                                                                                                                                    <  1:539242/142‑1 (MQ=255)  tgTATGGAACTGGATTTTCTTCTGAACGTGT‑GTATCTTGCTGGTATCCCCTGCGGACAGTATGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTatc                                                                                                                                                   <  1:406551/148‑1 (MQ=255)  ggTATTGAACTGGAGTTTCTTCTGACCCTGTCGTGAC‑TGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTatc                                                                                                                                                   <  1:401941/149‑1 (MQ=255)    tATGGAACTGGATTTTCTTCTGAACCTGTCGTGAC‑TGATGCCCTCCCTGACTCTGAGTCTACTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTCCAATAGCGCAATAATAGAATAAAACACTCAATTTCTATTTTttcag                                                                                                                                                 >  2:327718/1‑147 (MQ=255)       tggacgggATTTTCTTGTTAACCTGTGGTAAC‑TGATGCCCTCCCTGACTCTGGGTCTGCTCACAAAAGGACTGTGTTCGTTACTGGCTCTCTGGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTatcgatcg                                                                                                                                              <  2:723456/143‑1 (MQ=255)           cTGGATTTTCTTCTGAACCTGTCGTGAC‑TGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTta                                                                                                                                          >  2:141217/1‑149 (MQ=255)             ggATTTTCTTCTTAACCTGTCGTGAC‑TGATGCCCTCCTTGACTCCGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTtata                                                                                                                                        <  2:449682/149‑1 (MQ=255)                     ttctGAACCTGTCGTGAC‑TGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATAtcgagcga                                                                                                                                >  1:361234/1‑149 (MQ=255)                      tctGAACCTGTCGTGAC‑TGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATcgatcgat                                                                                                                               >  2:625075/1‑149 (MQ=255)                       ctGAACCTGTCGTGAC‑TGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTtata                                                                                                                                        <  2:784672/139‑1 (MQ=255)                       ctGAACCTGTCGTGAC‑TGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATa                                                                                                                              >  2:406600/1‑149 (MQ=255)                       ctGAACCTGTCGTGAC‑TGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGACCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTtata                                                                                                                                        >  1:784672/1‑139 (MQ=255)                         gAACCTGTCGTGAC‑TGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAg                                                                                                                            >  1:230009/1‑149 (MQ=255)                          agccgttCGTGAT‑TGATGCCGTTTCAGGCTCTGAATCTGCTAACTAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGTAATAGCTCAATAATAGAATAAAACGATTAATATTTATTTTATCGATCGTTTATATCGATCGATAAGc                                                                                                                           <  2:135138/143‑1 (MQ=255)                          aaCCTGTCGTGAC‑TGATGCCCTCCCTGACTCTGAGTCTGCTCACGAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGc                                                                                                                           >  1:127204/1‑149 (MQ=255)                          aaCCTGTCGTGAC‑TGATGCCCTCCCTGACTCTGAGCCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGTATAAACGGATCAATTACTATTTTATCGATCGTTTATATCGATCGATAAGc                                                                                                                           >  2:201331/1‑149 (MQ=255)                                    gAC‑TGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAAc                                                                                                                 >  1:822653/1‑149 (MQ=255)                                    gAC‑CGATGCCCTCCCTTACTCTGAGTCTGCTCACACAAGAACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAAc                                                                                                                 <  2:12851/149‑1 (MQ=255)                                      c‑TGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCt                                                                                                               >  1:496653/1‑149 (MQ=255)                                        tgctGCCCTCCCTGGCACTAAGTCTTCGCACAAAAGCACTTTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCtt                                                                                                              >  2:716181/4‑149 (MQ=255)                                         gATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCttt                                                                                                             <  1:625075/149‑1 (MQ=255)                                         gATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCAATATGCTCATAATAACCttt                                                                                                             >  1:232500/1‑149 (MQ=255)                                         gATGCCCCCACTGACACGGAGTCTGCTCAAAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTGTATATCGATCGATAAGCTAATAATAACCttt                                                                                                             <  2:777568/149‑1 (MQ=255)                                           tGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGt                                                                                                           <  1:648980/149‑1 (MQ=255)                                             ccctccctGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCa                                                                                                         <  1:816727/149‑1 (MQ=255)                                               ctccctGACTCTGAGTCTGCTCACACAAGCACTTGGTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGt                                                                                                       >  2:823105/1‑149 (MQ=255)                                                tccctGAATCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATAGTCCGTAAGGGTAATTATAACCTTTGTCAGTa                                                                                                      >  2:389530/1‑149 (MQ=255)                                                  cctGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAAc                                                                                                    >  2:33771/1‑149 (MQ=255)                                                   ctGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCtaat                                                                                                                       >  2:181111/1‑129 (MQ=255)                                                   ctGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCtaat                                                                                                                       <  1:181111/129‑1 (MQ=255)                                                    tGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACAt                                                                                                  <  1:474721/149‑1 (MQ=255)                                                       cgtggAGTCTGCTCACAAAAGCACTGTCTTCGTTGCTGTCGCGCTTGTCCGTGAAATAGCTCAATAATAGAATAAACCGATCACTCACTATATTATCGATCGTTTATATCGCTGGGCAGGTTAATAATAACCATCGTCAGTAATATGca                                                                                               <  2:630333/145‑1 (MQ=255)                                                             gTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATa                                                                                         <  2:756515/149‑1 (MQ=255)                                                              tCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATAc                                                                                        <  1:40473/149‑1 (MQ=255)                                                              tCTGCTCAAAAAAGCAATGGTTTCCTTTCTGATCCTCTAAGCCGTGCAATAGCACAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATAc                                                                                        <  1:230373/149‑1 (MQ=255)                                                                 gCTCACAAAAGCACTGTTTTCGTTACTGTCTTTCTCGACCGGGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTa                                                                                     >  1:203427/1‑149 (MQ=255)                                                                 gCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAGTTATAACCTTTGTCAGTAACATGCACAGATACGTa                                                                                     <  2:822653/149‑1 (MQ=255)                                                                  atCAAAAAGGCACTCTGTTCGTTAATGTCTTTGTTGGGCGTGCAATAGCTCAATAATAGAAGAAATCGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCCTTGTCAGTAACATGCACAGATACGTAc                                                                                    <  2:236694/148‑1 (MQ=255)                                                                     acaAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCACTAGCGCAATAATAGAATAAGACGATCAAGATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAAACTTTTGCCGTAACCAGCACAGATGCGTACAGa                                                                                 >  2:382924/1‑149 (MQ=255)                                                                     acaAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGACTACAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACTTACAGa                                                                                 >  2:775679/1‑149 (MQ=255)                                                                       aaaaGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGaaa                                                                               <  1:141217/149‑1 (MQ=255)                                                                         aaGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTCTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGa                                                                             <  1:813524/149‑1 (MQ=255)                                                                         aaGCACCGTTTTCGTCAGTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGa                                                                             <  2:188402/149‑1 (MQ=255)                                                                           gCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACa                                                                           <  2:258860/149‑1 (MQ=255)                                                                               tGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCa                                                                       >  1:730549/1‑149 (MQ=255)                                                                               tGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCa                                                                       >  1:819677/1‑149 (MQ=255)                                                                                gTTTTCGCTACTGTCTCTCTTGTCCGTGTAATAGCTCAATAATAGAATAAAGCGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAg                                                                      <  2:447462/149‑1 (MQ=255)                                                                                 ttttCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTc                                                                        >  1:465211/1‑146 (MQ=255)                                                                                 ttttCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTc                                                                        <  2:465211/146‑1 (MQ=255)                                                                                       ttACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGaacaa                                                               <  1:823105/149‑1 (MQ=255)                                                                                        tACTATCTCTGTTAGTCGTGCAATATCTCACTTATCGAATCACTCGAGTCCTATCTACTTTATCGATCGTTTATATCGCTCGATACGCGAATAATACCCTTTTTCAGTTACATGCGTAGATACGTATATAAAGACATTCAGGTaacaac                                                              <  2:281990/149‑1 (MQ=255)                                                                                               tctctTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGt                                                                                                           >  1:287551/1‑97 (MQ=255)                                                                                               tctctTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGt                                                                                                           <  2:287551/97‑1 (MQ=255)                                                                                               tctctTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACca                                                       <  2:127204/149‑1 (MQ=255)                                                                                                 tctTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACcaca                                                     >  1:722734/1‑149 (MQ=255)                                                                                                  ctTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACaa                                                    <  2:230009/149‑1 (MQ=255)                                                                                                     gTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTc                                                 >  1:742939/1‑149 (MQ=255)                                                                                                      gccGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCa                                                <  2:192631/148‑1 (MQ=255)                                                                                                          tGCAATAGCTCAATAATAGAATCCACCGCTCAAGGTCTATTTTATCGATCGTTTATATCGATCGATAAGCTCATAATAACCTTTGTCAGTAACATGCACAGATACGTACAAAAAGACATTCAGGGAACAACAGAACCACAATTCAaaa‑a                                           >  2:397827/1‑149 (MQ=255)                                                                                                            cAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAAAA‑ACt                                         >  2:766314/1‑149 (MQ=255)                                                                                                              attgCTCAATTATAGACAAAAGCGATGAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATTCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAA‑ACTcc                                       <  2:498290/146‑1 (MQ=255)                                                                                                                  cTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCAATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAAACATTCAGGGAACAACAGAACCACAATTCAGAACACCCCcac                                    >  2:404238/1‑149 (MQ=255)                                                                                                                             aaTAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACGAAACCACAATTCAGAA‑ACTCCCACAGCCGGACCTcc                        >  2:469657/1‑149 (MQ=255)                                                                                                                             aaTAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAA‑ACTCCCACAGCCGGACCTcc                        >  2:720094/1‑149 (MQ=255)                                                                                                                             aaTAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAAAAGAACCACAATTCAGAA‑ACTCCCACAGCCCGAACTcc                        >  2:559889/1‑149 (MQ=255)                                                                                                                              aTAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAA‑ACTCCCACAGCCGGACCTCCg                       >  1:25136/1‑149 (MQ=255)                                                                                                                                   cccaTCAATATCTATTTTATCGATCGATTATATCTATCGATGAGCTCAGGACGACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAA‑ACTCCCACAGCCGGACCTCCGGCACt                  <  1:406600/146‑1 (MQ=255)                                                                                                                                   aCGATCAATATCGATTTTATCGACCGTTTATATCGAACGATAAGCTAATAATAACCTTTGTAAGTAAAATGCACCGATACGTACAGAAAGAAATTCAGGAAAAGAAAGAACCACAGTGCAGAA‑ACTCCAACAGCCGGCCCTCCggagcg                  >  2:705944/1‑145 (MQ=255)                                                                                                                                   aCGAGCAATATCTATTTTATAGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAA‑ACTCCCACAGCCGGACCTCCGGCACt                  <  2:458880/149‑1 (MQ=255)                                                                                                                                         aaTATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACca                                                       <  1:472079/107‑1 (MQ=255)                                                                                                                                         aaTATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACca                                                       >  2:472079/1‑107 (MQ=255)                                                                                                                                              cTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAA‑GCTCCCGCAGCGGGACTTGCGGCACTGTAGCCCTGTa       <  2:203427/149‑1 (MQ=255)                                                                                                                                              cTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAA‑ACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTa       <  2:731541/149‑1 (MQ=255)                                                                                                                                              cTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAA‑ACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTa       >  1:847880/1‑149 (MQ=255)                                                                                                                                                 ttttATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAA‑ACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCt    >  1:63369/1‑149 (MQ=255)                                                                                                                                                   ttATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACGACAGAACCACAATTCAGAA‑ACTCCCTCAGCCGGACCTCCGGCACTGTAACCCTTTACCTGc  <  2:742939/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                      CGGTATGGAACTGGATTTTCTTCTGAACCTGTCGTGAC‑TGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAA‑ACTCCCACAGCCGGACCTCCGGCACTGTAACCCTTTACCTGC  >  NC_000913_3_pae_tpiA/2071186‑2071479

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.