New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 1468681	NA (NA)	10 (0.490) +ACACCATGTTATCGGAGAGCTGCCAACGTATGGTTATCGTCGGG	3/202	3.0	33.2%	coding (146/906 nt)	insD1	IS2 transposase TnpB
	?	NC_000913_3_pae_tpiA	1650843 =	29 (0.980)					intergenic (+1/‑2)	ydfE/insD1	Qin prophage; pseudogene;Phage or Prophage Related/IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related
Rejected: Coverage evenness skew score above cutoff.

CGGAAAATACACGTCTGTTGTTGATCTCGCCCGCGCCAGAGCCAATCAACAGTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTGAGCGAAAACCTGCTGTACCGCCATCGAAACGGGCACATACAGGCAGAG  >  NC_000913_3_pae_tpiA/1650695‑1650989                                                                                                                                                     |                                                                                                                                                   cGGAAAATACACGTCTGTTTTTGTTCTCGTGGGCGCCCGAACCTATAAAAAAAAAACTGAAAACTCAACAGGAAACCTCAGCCCGGTCATTGCTGCCATTCATCGCCAATACAAGCAGACATGAAAAACACTCGCGGACGGAGTGGCCt                                                                                                                                                    >  2:163411/1‑149 (MQ=255)    aaaaTACACGTCTGTTGTTGATCTCGGCGGCGCCAGAGCCAATCAACAATACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGGAACAACTGGATGACGAACTGGCCTATg                                                                                                                                                 >  2:409927/1‑149 (MQ=255)      aaTACACGTCTGTTGTTGATCTCGCCCGCGCCAGAGCCAATCAACAGTACACTGAAAAATCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTAATCGCAAATCCAACCAGACATGCAAAACACTGGATGACGAAATGGCCCATggg                                                                                                                                               >  2:159338/1‑149 (MQ=255)        tACACGTCTGTTGTTGATCTCGCCCGCGCCAGAGCCAATCAACAGTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGTCATGGAAAACACTGGATGACGAACTGGCCTATGGgcg                                                                                                                                             >  2:391502/1‑149 (MQ=255)                tgttgtTGATCTCGCCCGCGCCAGAGCCAATCAACAGTACACTGAAAATTCGACCGGAAATATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGCCATGGAAAACACCGGATGCCGAACTGGCCTCTGGGCGCTGCCTCg                                                                                                                                     >  2:81539/1‑149 (MQ=255)                                  cgcCAGAGGCAATCAACAGTACACTGAAGATTCAACATGAAAAAGCAGCCCGGGCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACCCTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGa                                                                                                                   <  2:248164/149‑1 (MQ=255)                                  cgcCAGAGCCAATCAACAGTACACTGAAAATCCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGTCATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGa                                                                                                                   <  1:391502/149‑1 (MQ=255)                                       gagCCAATCAACAGTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGATGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAAAACTGGATggga                                                                                                              >  2:149766/1‑147 (MQ=255)                                          ccAATCAACAGTACGCTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCACTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTAtac                                                                                                           >  1:128847/1‑147 (MQ=255)                                                aaCAGTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGATGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGTGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGa                                                                                                     <  2:355959/149‑1 (MQ=255)                                                   aGTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGATGTGGAAAACACTGGGTGACCAACTGGCATATCGGCGCTGCTTCGCAGAAAGGCAGGACTTGATGGTATGCCTGCGATCa                                                                                                  >  2:394288/1‑149 (MQ=38)                                                     tACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAAt                                                                                                <  1:313574/149‑1 (MQ=255)                                                        acTGAAAATTCAACAGGGAAAATCAGCCCGGTCATTGCTACCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGCCGAACTGGCCTATGGGCGCTGCTTCGCCGACGGGCCGAACTTGATGGTATGCCCGCGCTCCATGcc                                                                                             >  2:407020/1‑149 (MQ=255)                                                          tGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCa                                                                                                                                   >  1:393784/1‑109 (MQ=255)                                                          tGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCa                                                                                                                                   <  2:393784/109‑1 (MQ=255)                                                          tGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCaa                                                                                           >  1:18308/1‑149 (MQ=255)                                                                   aaCAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTa                                                                                  >  2:390562/1‑149 (MQ=255)                                                                              tCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGATAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATgc                                                                       <  2:347153/149‑1 (MQ=255)                                                                              tCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGACTTTACCGGATCATgc                                                                       >  2:69703/1‑149 (MQ=255)                                                                                  ccgtgTCATTGCTGCCATTAATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACGGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCa                                                                   <  2:257406/145‑1 (MQ=255)                                                                                                  aTTCAGCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCtt                                                   <  1:403574/149‑1 (MQ=255)                                                                                                   ttCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTg                                                  >  1:342162/1‑149 (MQ=255)                                                                                                          cgAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGACAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTGAGCGaaa                                           <  1:364174/149‑1 (MQ=255)                                                                                                             aTACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTGAGCGAAAAcc                                        <  1:115284/149‑1 (MQ=255)                                                                                                               aCAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTGAGCGAAAACctg                                      <  1:376597/149‑1 (MQ=255)                                                                                                                cAATCAGACATGGAACACACGGGATGACGAACGGGCCTATGGGCGCTGCTCCGCAGACAGGCAGAACTCGATGGTATGCCTGCGATCACTGCCAAACGTGTTTACCGGATCATGCGTCAGAATGCGCTGTTGCTTGAGCGAAAACctcc                                     <  2:359136/149‑3 (MQ=17)                                                                                                                           ggAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTGAGCGAAAACCTGCTGTACCGCCAt                          <  2:181325/149‑1 (MQ=255)                                                                                                                            gAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTGAGCGAAAACCTGCTGTACCGCCATc                         <  2:18308/149‑1 (MQ=255)                                                                                                                                                   ccTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTGAGCGAAAACCTGCTGTACCGCCATCGAAACGGGCACATACAGGCagag  <  1:303342/149‑1 (MQ=31)                                                                                                                                                     |                                                                                                                                                   CGGAAAATACACGTCTGTTGTTGATCTCGCCCGCGCCAGAGCCAATCAACAGTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTGAGCGAAAACCTGCTGTACCGCCATCGAAACGGGCACATACAGGCAGAG  >  NC_000913_3_pae_tpiA/1650695‑1650989

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.