| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 278350 = | 155 (1.140) | 21 (0.160) | 17/240 | 12.9 | 12.5% | coding (453/1047 nt) | afuC | CP4‑6 prophage; putative ferric transporter subunit |
| ? | NC_000913_3_pae_tpiA | 278377 = | 148 (1.150) | coding (426/1047 nt) | afuC | CP4‑6 prophage; putative ferric transporter subunit | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTTATGGCCTGAAAATGCTCGGCGTACCGCGCGCAGAGCTGAAAGCCCGCGTCAAAGAGGCGTTGGCGATGGTGGATCTGGAAGGATTCGAAGACCGCTTTGTCGATCAGATCTCCGGCGGGCAGCAGCAGCGCGTGGCGCTGGCCCGCGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/278504‑278350‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgctgCTGCTGCCCGCCGGAGATCTGATCGACAAAGCGGTCTTCGAATCCTTCCAGATCCACCATCGCCAACGCCTCTTTGACGCGGGCTTTCAGCTCTGCGCGCGGTACGCCGAGCATTTTCAGGCCATAACCGACATTCTCTCCCAGCGAC > NC_000913_3_pae_tpiA/278377‑278524 GTTATGGCCTGAAAATGCTCGGCGTACCGCGCGCAGAGCTGAAAGCCCGCGTCAAAGAGGCGTTGGCGATGGTGGATCTGGAAGGATTCGAAGACCGCTTTGTCGATCAGATCTCCGGCGGGCAGCAGCAGCGCGTGGCGCTGGCCCGCG > 2:741698/1‑150 GGCCTGAAAATGCTCGGCGTACCGCGCGCAGAGCTGAAAGCCCGCGTCAAAGAGGCGTTGGCGATGGTGGATCTGGAAGGATTCGAAGACCGCTTTGTCGATCAGATCTCCGGCGGGCAGCAGCAGCGCGTGGCGCTGGCCCGCGCGCTG > 3:496778/1‑150 GGCCTGAAAATGCTCGGCGTACCGCGCGCAGAGCTGAAAGCCCGCGTCAAAGAGGCGTTGGCGATGGTGGATCTGGAAGGATTCGAAGACCGCTTTGTCGATCAGATCTCCGGCGGGCAGCAGCAGCGCGTGGCGCTGGCCCGCGCGCTG > 2:582169/1‑150 CAAAGAGGCGTTGGCGATGGTGGATCTGGAAGGATTCGAAGACCGCTTTGTCGATCAGATCTCCGGCGGGCAGCAGCAGCGCGTGGCGCTGGCCCGCGCGC < 4:388157/101‑1 CAAAGAGGCGTTGGCGATGGTGGATCTGGAAGGATTCGAAGACCGCTTTGTCGATCAGATCTCCGGCGGGCAGCAGCAGCGCGTGGCGCTGGCCCGCGCGC > 3:388157/1‑101 ACCGCTTTGTCGATCAGATCTCCGGCGGGCAGCAGCAGCGCGTGGCGCTGGCCCGCGCGC > 4:45852/1‑60 ACCGCTTTGTCGATCAGATCTCCGGCGGGCAGCAGCAGCGCGTGGCGCTGGCCCGCGCGC < 3:45852/60‑1 CGCTTTGTCGATCAGATCTCCGGCGGGCAGCAGCAGCGCGTGGCGCTGGCCCGCGCGCTGCTGCTGCCCGCCGGAGATCTGATCGACAAAGCGGTCTTCGAATCCTTCCAGATCCACCATCGCCAACGCCTCTTTGACGCGGGCTTTCAG > 3:279704/1‑150 GATCAGATCTCCGGCGGGCAGCAGCAGCGCGTGGCGCTGGCCCGCGCGCTGCTGCTGCCCGCCGGAGATCTGATCGACAAAGCGGTCTTCGAATCCTTCCAGATCCACCATCGCCAACGCCTCTTTGACGCGGGCTTTCAGCTCTGCGCG > 1:712109/1‑150 TCAGATCTCCGGCGGGCAGCAGCAGCGCGTGGCGCTGGCCCGCGCGCTGCTGCTGCCCGCCGGAGATCTGATCGACAAAGCGG > 1:241844/1‑83 TCAGATCTCCGGCGGGCAGCAGCAGCGCGTGGCGCTGGCCCGCGCGCTGCTGCTGCCCGCCGGAGATCTGATCGACAAAGCGG < 2:241844/83‑1 AGCAGCAGCGCGTGGCGCTGGCC‑‑CGCGCTGCTGCTGCCCGCCGGAGATCTGATCGACAAAGCGGTCTTCGAATCCTTCCAGATCCACCATCGCCAACGCCTCTTTGACGCGGGCTTTCAGCTCTGCGCGCGGTACGCCGAGCATTTTCAG > 1:900320/1‑150 GCAGCGCGTGGCGCTGGCCCGCGCGCTGCTGCTGCCCGCCGGAGATCTGATCGACAAAGCGGTCTTCGAATCCTTCCAGATCCACCATCGCCAACGCCTCTTTGACGCGGGCTTTCAGCTCTGCGCGCGGTACGCCGAGCATTTTCAGGC < 2:712109/150‑1 CAGCGCGTGGCGCTGGCCCGCGCGCTGCTGCTGCCCGCCGGAGATCTGATCGACAAAGCGGTCTTCGAATCCTTCCAGATCCACCATCGCCAACGCCCCTTTGACGCGGGCTTTCAGCTCTGCGCGCGGTACGCCGAGCATTTTCAGGCC > 3:83530/1‑150 CAGCGCGTGGCGCTGGCCCGCGCGCTGCTGCTGCCCGCCGGAGATCTGATCGACAAAGCGGTCTTCGAATCCTTCC < 1:1411728/76‑1 CAGCGCGTGGCGCTGGCCCGCGCGCTGCTGCTGCCCGCCGGAGATCTGATCGACAAAGCGGTCTTCGAATCCTTCC > 2:1411728/1‑76 AGCGCGTGGCGCTGGCCCGCGCGCTGCTGCTGCCCGCCGGAGATCTGATCGACAAAGCGGTCTTCGAATCCTTCCAGATCCACCATCGCCAACGCCTCTTTGACGCGGGCTTTCAGCTCTGCGCGCGGTACGCCGAGCATTTTCAGGCCA > 3:746580/1‑150 AGCGCGTGGCGCTGGCCCGCGCGCTGCTGCTGCCCGCCGGAGATCTGATCGACAAAGCGGTCTTCGAATCCTTCCAGATCCACCAT > 2:405995/1‑86 AGCGCGTGGCGCTGGCCCGCGCGCTGCTGCTGCCCGCCGGAGATCTGATCGACAAAGCGGTCTTCGAATCCTTCCAGATCCACCAT < 1:405995/86‑1 GCGCGTGGCGCTGGCCCGCGCGCTGCTGCTGCCCGCCGGAGATCTGATCGACAAAGCGGTCTTCGAATCCTTCCAGATCCACCATCGCCAACGCCTCTTTGACGCGGGCTTTCAGCTCTGCGCGCGGTACGCCGAGCATTTTC < 1:1236075/143‑1 GCGCGTGGCGCTGGCCCGCGCGCTGCTGCTGCCCGCCGGAGATCTGATCGACAAAGCGGTCTTCGAATCCTTCCAGATCCACCATCGCCAACGCCTCTTTGACGCGGGCTTTCAGCTCTGCGCGCGGTACGCCGAGCATTTTC > 2:1236075/1‑143 GCGCGTGGCGCTGGCCCGCGCGCTGCTGCTGCCCGCCGGAGATCTGATCGACAAAGCGGTCTTCGAATCCTTCCAGATCCACCATCGCCAACGCCTCTTTGACGCGG < 2:1549772/107‑1 GCGCGTGGCGCTGGCCCGCGCGCTGCTGCTGCCCGCCGGAGATCTGATCGACAAAGCGGTCTTCGAATCCTTCCAGATCCACCATCGCCAACGCCTCTTTGACGCGG > 1:1549772/1‑107 GCGCGTGGCGCTGGCCCGCGCGCTGATGCTGCCCGACGGAGATCTGATCGCCAAAGCGGTCTTCGAATCCTTCCAGATCCACCATCGCCAACGCCTCTTTGACGCGGGCTTTCAG > 1:1476383/1‑115 GCGCGTGGCGCTGGCCCGCGCGCTGATGCTGCCCGACGGAGATCTGATCGACAAAGCGGTCTTCGAATCCTTCCAGATCCACCATCGCCAACGCCTCTTTGACGCGGGCTTTCAG < 2:1476383/115‑1 TGGCGCTGGCCCGCGCGCTGCTGCTGCCCGCCGGAGATCTGATCGACAAAGCGGTCTTCGAATCCTTCCAGATCCACCATCGCCAACGCCTCTTTGACGCGGGCTTTCAGCTCTGCGCGCGGTACGCCGAGCATTTTCAGGCCATAACCG < 4:83530/150‑1 GCCCGCGCGCTGCTGCTGCCCGCCGGAGATCTGATCGACAAAGCGGTCTTCGAATCCTTCCAGATCCACCATCGCCAACGCCTCTTTGACGCGGGCTTTCAGCTCTGCGCGCGGTACGCCGAGCATTTTCAGGCCATAACCGACATTCTC > 2:667951/1‑150 CGCGCGCTGCTGCTGCCCGCCGGAGATCTGATCGACAAAGCGGTCTTCGAATCCTTCCAGATCCACCATCGCCAACGCCTCTTTGACGCGGGCTTTCAGCTCTGCGCGCGGTACGCCGAGCATTTTCAGGCCATAACCGACATTCTCTCC < 4:279704/150‑1 CGCGCTGCTGCTGCCCGCCGGAGATCTGATCGACAAAGCGGTCTTCGAATCCTTCCAGATCCACCATCGCCAACGCCTCTTTGACGCGGGCTTTCAGCTCTGCGCGCGGTACGCCGAGCATTTTCAGGCCATAACCGACATTCTCTCCCA > 3:443664/1‑150 CGCGCTGCTGCTGCCCGCCGGAGATCTGATCGACAAAGCGGTCTTCGAATCCTTCCAGATCCACCATCGCCAACGCCTCTTTGACGCGGGCTTTCAGCTCTGCGCGCGGTACGCCGAGCATTTTCAGGCCATAACCGACATTCTCTCCCA < 2:613786/150‑1 CGCTGCTGCTGCCCGCCGGAGATCTGATCGACAAAGCGGTCTTCGAATCCTTCCAGATCCACCATCGCCAACGCCTCTTTGACGCGGGCTTTCAGCTCTGCGCGCGGTACGCCGAGCATTTTCAGGCCATAACCGACATTCTCTCCCAGC < 1:667951/150‑1 TGCTGCTGCCCGCCGGAGATCTGATCGACAAAGCGGTCTTCGAATCCTTCCAGATCCACCATCGCCAACGCCTCTTTGACGCGGGCTTTCAGCTCTGCGCGCGGTACGCCGAGCATTTTCAGGCCATAACCGACATTCTCTCCCAGCGAC < 2:1370315/150‑1 GTTATGGCCTGAAAATGCTCGGCGTACCGCGCGCAGAGCTGAAAGCCCGCGTCAAAGAGGCGTTGGCGATGGTGGATCTGGAAGGATTCGAAGACCGCTTTGTCGATCAGATCTCCGGCGGGCAGCAGCAGCGCGTGGCGCTGGCCCGCGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/278504‑278350‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgctgCTGCTGCCCGCCGGAGATCTGATCGACAAAGCGGTCTTCGAATCCTTCCAGATCCACCATCGCCAACGCCTCTTTGACGCGGGCTTTCAGCTCTGCGCGCGGTACGCCGAGCATTTTCAGGCCATAACCGACATTCTCTCCCAGCGAC > NC_000913_3_pae_tpiA/278377‑278524 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |