| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 2769787 = | 67 (1.290) | 3 (0.060) | 3/252 | NT | 5.1% | coding (85/702 nt) | yfjR | CP4‑57 prophage; putative DNA‑binding transcriptional regulator |
| ? | NC_000913_3_pae_tpiA | 2769834 = | 50 (1.040) | coding (132/702 nt) | yfjR | CP4‑57 prophage; putative DNA‑binding transcriptional regulator | |||||
CGTCGGGCACCATCTGCATCTCACTGCCAGCAGTGCGTAAGCGGCAGTATCCGGACTGATACTCCAGGTCCAGATACATCAGTCGTTCACGAAAATCACGCCGCAGCGTGCGCACTGACACGCCAAACTCAGCCGCCAGTTTGCGCACGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/2769937‑2769787‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgcacgctGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGCCCACCGCAGCGGGCTGGCCGGGCTTTTTCCC > NC_000913_3_pae_tpiA/2769834‑2769981 CGTCGGGCACCATCTGCATCTCACTGCCAGCAGTGCGTAAGCGGCAGTATCCGGACTGATACTCCAGGTCCAGATACATCAGTCGTTCACGAAAATCACGCCGCAGCGTGCGCACTGACACGCCAAACTCAGCCGCCAGTTTGCGCACG > 1:28099/1‑149CGTCGGGCACCATCTGCATCTCACTGCCAGCAGTGCGTAAGCGGCAGTATCCGGACTGATACTCCAGGTCCAGATACATCAGTCGTTCACGAAAATCACGCCGCAGCGTGCGCACTGACACGCCAAACTCAGCCGCCAGTTTGCGCACG > 1:830553/1‑149 CACGCCGCAGCGTGCGCACTGACACGCCAAACTCAGCCGCCAGTTTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCA < 1:324724/103‑1 CACGCCGCAGCGTGCGCACTGACACGCCAAACTCAGCCGCCAGTTTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCA > 2:324724/1‑103 CGCAGCGTGCGCACTGACACGCCAAACTCAGCCGCCAGTTTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCC > 1:584604/1‑149 ACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGCCCACCGCAGCGGGCTGGCCGGGCTTTT > 2:737699/1‑149 GCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGCCCACTGCAGCGGGCTGGCCGGGCTTTTTC > 1:692147/1‑149 GCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGCCCACCGCAGCGGGCTGGCCGGGCTTTTTC > 1:393799/1‑149 TGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGCCCACCGCAGCGGGCTGGCCGGGCTTTTTCCC > 2:660083/1‑149 TGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGCACACCGCAGCGGGCTGGCCGGGCTTTTTCgc > 1:514643/1‑147 CGTCGGGCACCATCTGCATCTCACTGCCAGCAGTGCGTAAGCGGCAGTATCCGGACTGATACTCCAGGTCCAGATACATCAGTCGTTCACGAAAATCACGCCGCAGCGTGCGCACTGACACGCCAAACTCAGCCGCCAGTTTGCGCACGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/2769937‑2769787‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcgcacgctGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGCCCACCGCAGCGGGCTGGCCGGGCTTTTTCCC > NC_000913_3_pae_tpiA/2769834‑2769981 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |