New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	2769787 =	67 (1.290)	3 (0.060)	3/252	NT	5.1%	coding (85/702 nt)	yfjR	CP4‑57 prophage; putative DNA‑binding transcriptional regulator
	?	NC_000913_3_pae_tpiA	2769834 =	50 (1.040)					coding (132/702 nt)	yfjR	CP4‑57 prophage; putative DNA‑binding transcriptional regulator

CCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGCCCACCGCAGCGGGCTGGCCGGGCTTTTTCCC  >  NC_000913_3_pae_tpiA/2769688‑2769981                                                                                                                                                   |                                                                                                                                                    ggcaccatctgcatctcactgccagcagtgcgtaagcggcagtatccggactgatactccaggtccagatacatcagtcgttcacgaaaatcacgccgcAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTgcg                                                                                                                                                   >  1:584604‑M1/100‑149 (MQ=255)   tGGAGAATCTCTCATGACACAGACAGAACGCCGCCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGCCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTgcggc                                                                                                                                                 >  1:480879/1‑149 (MQ=255)       gaATCTCTCATGACACAGGCAGAACGCCGCCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGa                                                                                                                                             <  1:660188/149‑1 (MQ=255)            tctcATGACACAGGCAGAACGCCGCCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTc                                                                                                                                        >  2:875187/1‑149 (MQ=255)            tctcATGACACAGGCAGAACGCCGCCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTc                                                                                                                                        >  1:138624/1‑149 (MQ=255)            tctcATGACACAGGCAGAACGCCGCCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTc                                                                                                                                        >  1:609025/1‑149 (MQ=255)             ctcATGACACAGGCAGAACGCCGCCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATGTTCg                                                                                                                                       >  1:72120/1‑149 (MQ=255)                 tGACACAGGCAGAACGCCGCCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGaa                                                                                                                                   <  2:504484/149‑1 (MQ=255)                 tGACACAGGCAGAACGCCGCCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGAGCAAACCGGCGGCTGAGTTTGGGGTGCCAGTGCGCACGCCGCGGCGTGATCTTCGTGaa                                                                                                                                   >  2:232379/1‑149 (MQ=17)                        ggCAGAACGCCGCCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGGAACGTTGAGCGTGCGCAAACTGGCGGCTGAGGTTGGCGTGTCAGGGCGCGCGCTGCGGCGTGATTTTCGTGAAAGGCTgg                                                                                                                            >  1:115414/1‑148 (MQ=18)                        ggCAGAACGCCGCCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGa                                                                                                                            <  1:265515/149‑1 (MQ=255)                         gCAGAACGCCGCCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGAt                                                                                                                           >  1:584990/1‑149 (MQ=255)                           aGAACGCCGTCATGACCGGCGGGCTGTCAGGCTGTCACTGATAATCAGCCCTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGt                                                                                                                         <  2:279371/149‑1 (MQ=255)                                   gccATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGAc                                                                                                                 >  1:821541/1‑149 (MQ=255)                                   gccATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGAc                                                                                                                 <  2:220115/149‑1 (MQ=255)                                       tggccGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTgg                                                                                                             <  2:804327/146‑1 (MQ=255)                                            ggctggctGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTAt                                                                                                        >  1:6934/1‑149 (MQ=255)                                              ctggctgTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCa                                                                                                      <  2:833934/149‑1 (MQ=255)                                              ctggctgTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCa                                                                                                      <  1:547222/149‑1 (MQ=255)                                                    tgatactccaggtccagatacatcagtcgttcacgaaaatcacgccgcAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTg                                                                                                                                              <  1:324724‑M1/55‑1 (MQ=255)                                                    tgatactccaggtccagatacatcagtcgttcacgaaaatcacgccgcAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTg                                                                                                                                              >  2:324724‑M1/49‑103 (MQ=255)                                                       aggctgtcaCTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTAGCGGTCggggtc                                                                                             >  2:511284/1‑146 (MQ=255)                                                          ctgttaCTTATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCCCACTCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTg                                                                                          <  2:605898/149‑1 (MQ=255)                                                             tcaCTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCg                                                                                       <  2:782892/149‑1 (MQ=255)                                                             tcaCTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCg                                                                                       >  2:177766/1‑149 (MQ=255)                                                                cTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGAGTGATGTCGCTGGGCCTGGAGTATCAGTCCGGATACTGCCGCtt                                                                                    >  1:500930/1‑149 (MQ=255)                                                                 tGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGCCCTGGAGTATCAGTCCGGATCCTGCCGCTTa                                                                                   >  1:110684/1‑149 (MQ=255)                                                                 tGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTa                                                                                   >  1:831580/1‑149 (MQ=255)                                                                  gATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTAc                                                                                  >  1:315189/1‑149 (MQ=255)                                                                    tAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGc                                                                                <  2:584990/149‑1 (MQ=255)                                                                     aaTCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCa                                                                               <  2:67379/149‑1 (MQ=255)                                                                      aTCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCAc                                                                              >  2:448281/1‑149 (MQ=255)                                                                       tCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGAGTGTCAGTGTGCACGCTGCGACGTGATTTTCGTGAACGACTGATGTATTTGGACCTGGAGTATCAGTCCGGATACTGACACTTCCGCAct                                                                             >  2:226278/1‑149 (MQ=21)                                                                           ccGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCActgctg                                                                         <  2:568409/149‑1 (MQ=255)                                                                              tCTGGTTGCGGGTGAAACGTTGAGGGTACGCAAACTAGCGGCTGAGGTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTAAGCACTGCTGGCa                                                                      >  2:229905/1‑149 (MQ=21)                                                                              tCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCa                                                                      >  1:286807/1‑149 (MQ=255)                                                                               cTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAg                                                                     <  1:177766/149‑1 (MQ=255)                                                                                tGGTTGCGGGTGAAGCGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGt                                                                    <  2:757939/149‑1 (MQ=255)                                                                                      cGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATg                                                              >  1:630501/1‑149 (MQ=255)                                                                                        ggTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCGGCTTACGCACTGCTGGCAGTGAGATGCa                                                            >  1:46053/1‑149 (MQ=255)                                                                                         gTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAg                                                           >  1:610757/1‑149 (MQ=255)                                                                                          tGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCGGTGAGATGCAGa                                                          >  2:845468/1‑149 (MQ=255)                                                                                          tGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGa                                                          >  2:728641/1‑149 (MQ=255)                                                                                          tGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGa                                                          >  2:728535/1‑149 (MQ=255)                                                                                           gAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGAt                                                         <  2:6934/149‑1 (MQ=255)                                                                                            cacgccgcagcgtgcgcactgacacgccaaactcagccgccagtttgcgcacgctGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCa                                                                                                      >  2:324724‑M2/56‑103 (MQ=255)                                                                                            cacgccgcagcgtgcgcactgacacgccaaactcagccgccagtttgcgcacgctGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCa                                                                                                      <  1:324724‑M2/48‑1 (MQ=255)                                                                                            aaaCGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGCCAGTGAGACGCAGATg                                                        >  2:109921/1‑149 (MQ=255)                                                                                                 cgcagcgtgcgcactgacacgccaaactcagccgccagtttgcgcacgctGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGcc                                                   >  1:584604‑M2/51‑149 (MQ=255)                                                                                                   gAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCg                                                 >  1:55828/1‑149 (MQ=255)                                                                                                      CGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACg                                              >  1:830553‑M1/1‑149 (MQ=255)                                                                                                      CGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACg                                              >  1:28099‑M1/1‑149 (MQ=255)                                                                                                        ggccccaaCTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTg                                            <  2:524375/143‑1 (MQ=255)                                                                                                              aaCTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATc                                      >  2:581078/1‑149 (MQ=255)                                                                                                                     ggcTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGccc                               >  1:864808/1‑149 (MQ=255)                                                                                                                               ggCGTGTCAGTGCGCACGCTGCTGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGCCCACCGCAGCgg                     <  2:593583/149‑1 (MQ=255)                                                                                                                                  gtgtCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGAGCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGCCCACCGCAGCGGGCt                  >  2:541100/1‑149 (MQ=255)                                                                                                                                  gtgtCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCGTTGCACACCGCACCTGGCt                  >  2:240197/1‑149 (MQ=255)                                                                                                                                   tgtCAGTGCGCACCCTGCGGCCTGATTTTCGTGAACTACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGCCCACCGCAGCGGGCTg                 <  1:590809/149‑1 (MQ=255)                                                                                                                                      cAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGCCCACCGCAGCGGGCTGGcc              <  2:633776/149‑1 (MQ=255)                                                                                                                                              acgctGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGCCCACCGCAGCGGGCTGGCCGGGCtttt      >  2:737699‑M2/6‑149 (MQ=255)                                                                                                                                                gctGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGCCCACTGCAGCGGGCTGGCCGGGCTTTTTc    >  1:692147‑M2/4‑149 (MQ=255)                                                                                                                                                gctGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGCCCACCGCAGCGGGCTGGCCGGGCTTTTTc    >  1:393799‑M2/4‑149 (MQ=255)                                                                                                                                                  tGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGCCCACCGCAGCGGGCTGGCCGGGCTTTTTccc  >  2:660083‑M2/2‑149 (MQ=255)                                                                                                                                                  tGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGCACACCGCAGCGGGCTGGCCGGGCTTTttcgc  >  1:514643‑M2/2‑147 (MQ=255)                                                                                                                                                   |                                                                                                                                                    CCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGACCGGCTGGCTGTCAGGCTGTCACTGATAATCAGCCGTCTGGTTGCGGGTGAAACGTTGAGCGTGCGCAAACTGGCGGCTGAGTTTGGCGTGTCAGTGCGCACGCTGCGGCGTGATTTTCGTGAACGACTGATGTATCTGGACCTGGAGTATCAGTCCGGATACTGCCGCTTACGCACTGCTGGCAGTGAGATGCAGATGGTGCCCGACGTGCTTATCTTTGCCCACCGCAGCGGGCTGGCCGGGCTTTTTCCC  >  NC_000913_3_pae_tpiA/2769688‑2769981

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.