New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 1062575NA (NA)4 (0.140) 4/276 3.6 12.1% coding (281/306 nt) cbpM modulator of CbpA co‑chaperone
?NC_000913_3_pae_tpiA = 1062596 29 (1.040)coding (260/306 nt) cbpM modulator of CbpA co‑chaperone
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCG  >  NC_000913_3_pae_tpiA/1062429‑1062718
                                                                                                                                                  |                                                                                                                                               
agtgTCGTATCAGGCAGTATGGGGGAGTTGCTGGGTGCGGGGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGc                                                                                                                                               <  2:170251/146‑1 (MQ=255)
   gTCGCATCAGGCATTATGGCGCAGTTCCCGGATGCGTCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGc                                                                                                                                            <  1:327610/149‑1 (MQ=255)
    tCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCCAACACACATCACGGATGAGCTACAAACCGCGAAAACCGCt                                                                                                                                           >  2:73270/1‑149 (MQ=255)
    tCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCt                                                                                                                                           >  2:289119/1‑149 (MQ=255)
      gCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTgg                                                                                                                                         <  2:446058/149‑1 (MQ=255)
                    ggCGCAGTTGCCGGATGCCGCGTGCACGTCTTATCCGCCCCACACGCCCTGTCACCTTTGTACACCGGTTAAGATGCGTCATCGGCTCCGGCAAACACACATCACCGACGCGCTACAAACCCGGAAAGCCGCTGGCCTAGCAGGCgggt                                                                                                                           >  2:116700/1‑147 (MQ=255)
                                ggATGCGGCGTGAACGTCTTATCCGGCCCACAAACACTATAATCTTGGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAg                                                                                                               <  2:105802/149‑1 (MQ=255)
                                  aTGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGAGGTTTTCCTGCTTCAGGt                                                                                                             <  2:490677/149‑1 (MQ=255)
                                           gAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACACCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAatat                                                                                                    <  2:186281/149‑1 (MQ=255)
                                           gAACGGCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAatat                                                                                                    <  1:294681/149‑1 (MQ=255)
                                            aaCGTTTTATCCGGCCCACAGGAACGGTAATCTTTGTAGACCGGTGAAGATGCGTCATCGCATCCGTCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATatc                                                                                                   <  1:19054/149‑1 (MQ=255)
                                            aaCGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATatc                                                                                                   >  2:262113/1‑149 (MQ=255)
                                                     tCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCCGGCGGTTTTCCTTCTTCAGGTGCGCAATATCATCCATTaa                                                                                          >  2:472733/1‑149 (MQ=255)
                                                      ccGGCCCACAGGAACTGTAATCTTTTTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTGTTCCTGCTTCAGGTGCGCAATATCATCCATTAAc                                                                                         <  2:401072/149‑1 (MQ=255)
                                                                     tGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACcgcg                                                                          >  2:268734/1‑149 (MQ=255)
                                                                       tAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTCCAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCCGCTTCAGGTGCGCAAGATCATCCATTAACGCCAGCGCCACCGCGAt                                                                        >  1:314963/1‑149 (MQ=255)
                                                                          tCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCg                                                                                                                              <  1:324807/92‑1 (MQ=255)
                                                                          tCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCg                                                                                                                              >  2:324807/1‑92 (MQ=255)
                                                                          tCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGCTccc                                                                     >  1:146284/1‑149 (MQ=255)
                                                                          tCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATccc                                                                     >  1:479841/1‑149 (MQ=255)
                                                                            tttGTAGACGGGTTAGGATGCGTCATCGCATCCTGCAAACACACATCACGGATGAGCTATAAGCGGGGAAAGCCGGTGGCGCAGCAGGCGGTTTTCCTGCATCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCg                                                                   <  2:339313/149‑1 (MQ=255)
                                                                                   aCCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCCCGATCCCCGGCCAgcc                                                            >  2:368690/1‑147 (MQ=255)
                                                                                       gTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGCCAGCGCCACCACGATCCCCTGCCCGTcacga                                                        >  2:224205/1‑145 (MQ=255)
                                                                                         tAAGATGCGGCATGGCATCCGGCAAACACACAGCACGGATGAGCTAAAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGc                                                      <  2:135164/149‑1 (MQ=255)
                                                                                             aTGCATCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTCGCGCAGCAGCCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACATCACCGCCACCGCGATCCCCGCCCCGTCCAAAGCCact                                                  >  2:91646/1‑147 (MQ=255)
                                                                                                cGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCa                                               <  1:268734/149‑1 (MQ=255)
                                                                                                 gTCATCGCATCCGGCAAACACACATCACGGAAGGGCGGCAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGCTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCCACACCCCCCCACTCCCCCGCCAACGCAGAACCAGTTCag                                              >  2:32366/1‑148 (MQ=255)
                                                                                                       gCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCa                                        <  1:207859/149‑1 (MQ=255)
                                                                                                              gCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTAc                                 >  1:401866/1‑149 (MQ=255)
                                                                                                                         tCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGca                      <  1:289119/149‑1 (MQ=255)
                                                                                                                         tCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGca                      >  1:83821/1‑149 (MQ=255)
                                                                                                                                     tACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATggcgg          <  2:305221/149‑1 (MQ=255)
                                                                                                                                      aCAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATggcggc         <  2:504116/149‑1 (MQ=255)
                                                                                                                                            cGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGgtc   >  2:358776/1‑149 (MQ=255)
                                                                                                                                             gggAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGgtcg  <  1:333403/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                               
AGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCG  >  NC_000913_3_pae_tpiA/1062429‑1062718

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.