New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 1062575	NA (NA)	4 (0.140)	4/276	3.6	12.1%	coding (281/306 nt)	cbpM	modulator of CbpA co‑chaperone
	?	NC_000913_3_pae_tpiA	= 1062596	29 (1.040)					coding (260/306 nt)	cbpM	modulator of CbpA co‑chaperone
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGTCAAATACCCAGGTTGTTTCCTGG  >  NC_000913_3_pae_tpiA/1062461‑1062742                                                                                                                                        |                                                                                                                                                   ggATGCGGCGTGAACGTCTTATCCGGCCCACAAACACTATAATCTTGGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAg                                                                                                                                       <  2:105802/149‑1 (MQ=255)   aTGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGAGGTTTTCCTGCTTCAGGt                                                                                                                                     <  2:490677/149‑1 (MQ=255)            gAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACACCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAatat                                                                                                                            <  2:186281/149‑1 (MQ=255)            gAACGGCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAatat                                                                                                                            <  1:294681/149‑1 (MQ=255)             aaCGTTTTATCCGGCCCACAGGAACGGTAATCTTTGTAGACCGGTGAAGATGCGTCATCGCATCCGTCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATatc                                                                                                                           <  1:19054/149‑1 (MQ=255)             aaCGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATatc                                                                                                                           >  2:262113/1‑149 (MQ=255)                      tCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCCGGCGGTTTTCCTTCTTCAGGTGCGCAATATCATCCATTaa                                                                                                                  >  2:472733/1‑149 (MQ=255)                       ccGGCCCACAGGAACTGTAATCTTTTTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTGTTCCTGCTTCAGGTGCGCAATATCATCCATTAAc                                                                                                                 <  2:401072/149‑1 (MQ=255)                                      tGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACcgcg                                                                                                  >  2:268734/1‑149 (MQ=255)                                        tAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTCCAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCCGCTTCAGGTGCGCAAGATCATCCATTAACGCCAGCGCCACCGCGAt                                                                                                >  1:314963/1‑149 (MQ=255)                                           tCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGCTccc                                                                                             >  1:146284/1‑149 (MQ=255)                                           tCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATccc                                                                                             >  1:479841/1‑149 (MQ=255)                                             tttGTAGACGGGTTAGGATGCGTCATCGCATCCTGCAAACACACATCACGGATGAGCTATAAGCGGGGAAAGCCGGTGGCGCAGCAGGCGGTTTTCCTGCATCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCg                                                                                           <  2:339313/149‑1 (MQ=255)                                                    aCCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCCCGATCCCCGGCCAgcc                                                                                    >  2:368690/1‑147 (MQ=255)                                                        gTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGCCAGCGCCACCACGATCCCCTGCCCGTcacga                                                                                >  2:224205/1‑145 (MQ=255)                                                          tAAGATGCGGCATGGCATCCGGCAAACACACAGCACGGATGAGCTAAAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGc                                                                              <  2:135164/149‑1 (MQ=255)                                                              aTGCATCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTCGCGCAGCAGCCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACATCACCGCCACCGCGATCCCCGCCCCGTCCAAAGCCact                                                                          >  2:91646/1‑147 (MQ=255)                                                                 cGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCa                                                                       <  1:268734/149‑1 (MQ=255)                                                                  gTCATCGCATCCGGCAAACACACATCACGGAAGGGCGGCAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGCTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCCACACCCCCCCACTCCCCCGCCAACGCAGAACCAGTTCag                                                                      >  2:32366/1‑148 (MQ=255)                                                                        gCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCa                                                                <  1:207859/149‑1 (MQ=255)                                                                               gCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTAc                                                         >  1:401866/1‑149 (MQ=255)                                                                                          tCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGca                                              >  1:83821/1‑149 (MQ=255)                                                                                          tCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGca                                              <  1:289119/149‑1 (MQ=255)                                                                                                      tACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATggcgg                                  <  2:305221/149‑1 (MQ=255)                                                                                                       aCAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATggcggc                                 <  2:504116/149‑1 (MQ=255)                                                                                                             cGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGgtc                           >  2:358776/1‑149 (MQ=255)                                                                                                              gggAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGgtcg                          <  1:333403/149‑1 (MQ=255)                                                                                                                     ccGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGTCAAATa                   <  1:358776/149‑1 (MQ=255)                                                                                                                                      ggTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGTCAAATACCCAGGTTGTTTCCTgg  >  1:176921/1‑149 (MQ=255)                                                                                                                                        |                                                                                                                                                   GGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTCGTCAAATACCCAGGTTGTTTCCTGG  >  NC_000913_3_pae_tpiA/1062461‑1062742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.