| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 2236680 = | 49 (1.250) | 5 (0.130) | 5/272 | 5.0 | 9.3% | noncoding (147/150 nt) | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913_3_pae_tpiA | 3639209 = | NA (NA) | noncoding (1/98 nt) | RIP261 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP261 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGAATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGT > NC_000913_3_pae_tpiA/2236532‑2236828 | tCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGGATGTTGAGCTTAGTGTAGGCCGGATAAAACGCTCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGATCGTCTTATCCGGcc < 2:651180/149‑1 (MQ=38) gCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTa > 1:490533/1‑149 (MQ=255) aTGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACaaaa < 1:435392/149‑1 (MQ=255) aTGCGGCTTGAACGCCTTATCCGGCCTAAAAAACCATACAAATCAGTATGTTGAGGTTATTGTAGGCCGGATAAAACGAGCCAGAGTTGCATTCGGAATTTGGCGGCGGGTGCAGGATGCGGCGTGAACGCCTTATCCGGCCTACaaaa > 1:597947/1‑149 (MQ=38) ggCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTGCAAACCcac > 1:697025/1‑149 (MQ=255) gCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACcaca > 1:148100/1‑149 (MQ=255) cTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCatga > 2:182767/1‑149 (MQ=255) gccGGCCTACAAAAGCATACAAATCAGTAGGTTGAGCTTCTTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCAGTTGGCTCCTGTTGCCGGATGCGGTGTGAACGCCTTATCCGGCCTACAAAACCATATAGATCATGATGtt < 2:593799/148‑1 (MQ=37) gCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTAtgt > 1:148882/1‑149 (MQ=255) cTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGc < 1:453657/149‑1 (MQ=255) aaCCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTAt > 1:690856/1‑149 (MQ=255) aaCCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTAt > 1:690530/1‑149 (MQ=255) ccATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTAtta > 2:285199/1‑147 (MQ=255) cATACAAATCAGTATGCTGAGATTATTGTAGGCCGGATAAAACCGTCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGAc < 2:637344/149‑1 (MQ=37) tACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTCTGTGCGTTTATGACCg > 2:495593/1‑149 (MQ=255) tACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCg > 2:628784/1‑149 (MQ=255) tACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGCCAGTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACAACACAGGTCATCATGTTATGTGCGTTTATGAccc > 2:206978/1‑148 (MQ=38) ttCAGTATGTTGAGCTTATTGTTGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGc < 1:5990/148‑1 (MQ=255) tCAGTATGTTTAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCg < 2:559937/149‑1 (MQ=255) aGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGa < 1:213201/149‑1 (MQ=255) cTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATACGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGCCCGCGTTcaca > 1:443020/1‑149 (MQ=255) ttATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGttt > 2:302900/1‑122 (MQ=255) ttATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGttt < 1:302900/122‑1 (MQ=255) ttGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGCGAACGCCGTATCCGGCCTAGAAAAACACACAGATCATGATGTTATCTGCGTTTATGACCGAATGCGGACACCATacaccacac > 1:640181/1‑144 (MQ=38) ttGAAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCAcatcat < 1:9628/149‑1 (MQ=255) tAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTc < 2:690856/149‑1 (MQ=255) tAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTc < 2:690530/149‑1 (MQ=255) gCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTCTCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACACTCACATCATTTCTTa > 2:314361/1‑149 (MQ=255) ccGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACAGTCACATCATTTCTTAc < 1:628784/149‑1 (MQ=255) tgcccGTTTCACNCGGCATTGTGCTCCTGTTGCCGCATGCGGCGTGAACGCCTTAGCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGt < 1:30647/145‑1 (MQ=255) ccAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGt < 2:706446/149‑1 (MQ=255) ccAGCGTTGCATCCGGCATTTGGCCCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGt < 2:434040/149‑1 (MQ=255) cGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGAAt < 1:182767/149‑1 (MQ=255) gCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACca > 2:686205/1‑108 (MQ=255) gCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACca < 1:686205/108‑1 (MQ=255) tCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGAATCCAgcgc > 1:100537/1‑149 (MQ=255) tGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGAATCCAGCGCTACGGCGaa < 2:148882/149‑1 (MQ=255) ggCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGAATCCAGCGCTCCGGCGCAg > 1:346884/1‑149 (MQ=255) ccTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGAATCCAGCGCTACGGCGAAGataa < 2:100537/149‑1 (MQ=255) ttGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGAGGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCACTTCTTACGCGCGTATTTCAGTGAATCCAGCGCTACGGCGAAGAtaagaac > 2:1140/1‑148 (MQ=255) tGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGAATCCAGCGCTACGGCGAAGATAATAATCGCCCCtt < 2:693535/149‑1 (MQ=255) ggcgTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACTGGAGGAGGCCAAAGAACCCAGCGCCACGGCGAAGATAATAATCGCCCATTtga > 1:239971/1‑149 (MQ=255) gcgTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGAATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTtgat < 1:448427/149‑1 (MQ=255) gAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTAACTTTAGGACCTAATGGGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGAATCCAGCCCTACGGCGAAGATAATAATCGCCCCTTTGatgctg > 2:660117/1‑149 (MQ=255) aCGCCTTATCCGGCCTACAAAACCACACAGAACATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGAATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTa < 2:148100/149‑1 (MQ=255) cGCCTTATCCGGCCCACAAAACCACACAGATCATGATGTTACGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGAATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTAc < 2:477166/149‑1 (MQ=255) gCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGt > 1:281791/1‑100 (MQ=255) gCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGt < 2:281791/100‑1 (MQ=255) gCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGAATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGGTGATGTACt > 2:5874/1‑149 (MQ=255) gCCTACAAAACCACACAGATCATGATGTTAGTTGCGTTTATGACCGAATGCTGACCACATTCACATCATTTCTTACGCGCGTATTTCATTTAATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATgg < 2:597947/149‑1 (MQ=255) cTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGAATCCAGCGCTACGGCGAAGATAATCATCGCCCCTTTGCTGATGTACTGCAAGTATGGGt > 2:679533/1‑149 (MQ=255) | TCGCCGGATGCGGCTTGAACGCCTTATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGATGTTATGTGCGTTTATGACCGAATGCGGACCACATTCACATCATTTCTTACGCGCGTATTTCAGTGAATCCAGCGCTACGGCGAAGATAATAATCGCCCCTTTGATGATGTACTGCCAGTATGGGT > NC_000913_3_pae_tpiA/2236532‑2236828 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |