New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA 2236680 =49 (1.250)5 (0.130) 5/272 5.0 9.3% noncoding (147/150 nt) REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences
?NC_000913_3_pae_tpiA 3639209 = NA (NA)noncoding (1/98 nt) RIP261 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP261 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCGGGTCAGCTGGCCCGCTTCAGATTGTGACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCT  >  NC_000913_3_pae_tpiA/3639062‑3639355
                                                                                                                                                   |                                                                                                                                                  
agATGGCCTGGGTGTTTACCCTTGCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTATGCAACAAAACGAGCGGGTCAGCTGGTCCGCTTCAGATTGTGACATACTGCGCTTTGTTCATGc                                                                                                                                                   >  2:665351/2‑149 (MQ=255)
   tGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCGGGTCAGCTGGCCCGCTTCAGATTGTGACATAGTGCGCTTTGTTCATGCCgg                                                                                                                                                >  1:99194/1‑149 (MQ=255)
         gggTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTATACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCGGGTCAGCTGGCCCGCTTCAGATTGTGACATAGTGCGCTTTGTTCATGCCGGATgcgg                                                                                                                                          >  1:434669/1‑149 (MQ=255)
                     ttCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCGGGTCAGCTGGCCCGCTTCAGATTGTGACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCtt                                                                                                                              >  1:494020/1‑149 (MQ=255)
                     ttCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGCGATCGTACGCACCAAAACGAGCGGGTCAGCTGGCCCGCTTCAGATTGTGACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCtt                                                                                                                              >  1:502932/1‑149 (MQ=255)
                                gTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCGGGTCAGCTGGCCCGCTTCAGATTGTGACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAc                                                                                                                   <  2:176599/149‑1 (MQ=255)
                                gTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACACACCAAAACGAGCGGGTCAGCTGGCCCGCTTCAGATTGTGACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAc                                                                                                                   >  2:588158/1‑149 (MQ=255)
                                               gtcttGTCCTGGCCCTCCTTGCAGTTCCGGTAATCGTACGCACCAAAACGAGCGGGTCAGCTGGCCCGCTTCAGATGGTGACATAGTGCGCTTTGTTCATGCCGCATGCGGCGTGAACGCCTTTTCCGGCCTACAAAAACATGCAAAtt                                                                                                    <  1:278718/145‑1 (MQ=255)
                                                        tGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCGGGTCAGCTGGCCCGCTTCAGATTGTGACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGAtt                                                                                           >  1:291037/1‑149 (MQ=255)
                                                           ctctCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCGGGTCAGCTGGCCCGCCTCAGATTGTGACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCa                                                                                        <  1:256076/149‑1 (MQ=255)
                                                           cccgccTTTCAGTGCCTGTATTCGTACGCACGAAACGGAGCGGGTCAGCTGGCCCGCTTCAGATTGTGACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGCACGGCTTAGCCGGCCGACAAAAACATGCAAATTCCATAGATTGCa                                                                                        <  2:96162/145‑1 (MQ=25)
                                                                cTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCGGGTCAGCTGGCCCGCTTCAGATTGTGACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGAt                                                                                   >  2:663463/1‑149 (MQ=255)
                                                                 ttGCAGTTCCTGTAATCGTACGCACCAAAACGAGCGGGTCAGCTGGCCCGCTTCAGATTGTGACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGAtt                                                                                  <  1:181175/149‑1 (MQ=255)
                                                                   gCAGTTCCTGTAATCGGACGCACCAAAACGAGCGGGTCAGCTGGCCCGCTTCAGATTGTGACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTAt                                                                                <  2:716153/149‑1 (MQ=255)
                                                                       ttCCTGTAAGCGTACGCACCAAAACGAGCGGGTCAGCTGGCCCGCTTCAGATTGTGACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAg                                                                            <  1:418227/149‑1 (MQ=255)
                                                                           tGTAATCGTACGCACCAAAACGAGCGGGTCAGCTGGCCCGCTTCAGATTGTGACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGc                                                                          >  2:120628/1‑147 (MQ=255)
                                                                           tGTAATCGTACGCACCAAAACGAGCGGGTCAGCTGGCCCGCTTCAGATTGTGACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGc                                                                          <  1:120628/147‑1 (MQ=255)
                                                                           tGTAATCGTACGCACCAAAACGAGCGGGTCAGCTGGCCCGCTTCAGATTGTGACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCt                                                                        >  1:422745/1‑149 (MQ=255)
                                                                           agcaagagTACGTAGCAAACCGAGCGGGTCAGGTGGCCTGCTTAAGATTGTGACATAGTGCTCTTTGTTCAGGCCGGCTGGGGCTTGAACGCTTTATACGGCCTCCAACAACATCCAAATTCAATAGATTGCAGAGATTATGTAGGCCt                                                                        <  2:135943/142‑1 (MQ=255)
                                                                             tAATCGTACGCACCAAAACGAGCGGGTCAGCTGGCCCGCTTCAGATTGTGACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGa                                                                      <  2:434669/149‑1 (MQ=255)
                                                                              aaTCGTACGCACCAAAACGAGCGGGTCAGCTGGCCCGCTTCAGATTGTGACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGACTGCAGAGATTATGTAGGCCTGAt                                                                     <  2:626958/149‑1 (MQ=255)
                                                                                tCGTACGCACCAAAACGAGCGGGTCAGCTGGCCCGCTTCAGATTGTGACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATaa                                                                   >  2:412402/1‑149 (MQ=255)
                                                                                  gttcGCACCAAAACGGGCGGGTCATCTGGCCCGCTTCAGATTGTGACATAGTTCGCTTTGTTCATGCCGGCTGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGc                                                                 <  1:665535/146‑1 (MQ=25)
                                                                                                  gCGGGTCAGCTGGCCCGCTTCAGATTGTGACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGGATCAgtcga                                                 <  2:664252/149‑5 (MQ=255)
                                                                                                      gTCAGCTGGCCCGCTTCAGATTGTGACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAACGAATCAGGCAGtttt                                             >  1:336573/1‑149 (MQ=255)
                                                                                                            tGGCCCGCTTCAGATTGTGACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGttt                                       <  2:291037/149‑1 (MQ=255)
                                                                                                            tGGCCCGCTTCAGATTGTGACATAGCGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATCCAAATTCAATAGATTGCAGACATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGttt                                       <  1:650282/149‑1 (MQ=255)
                                                                                                               cccGCTTCAGATTGTGACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGGAGCGCATCAGGCAATTTTGCGCTGGTa                                    >  1:325142/1‑149 (MQ=255)
                                                                                                                   cTTCAGATTGTGACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATcc                                >  2:350292/1‑148 (MQ=255)
                                                                                                                    ttCAGATTGTGACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAg                               >  1:365274/1‑149 (MQ=255)
                                                                                                                     tCAGATTGTGACATAGTACGCTTTCTTCATGCCGGATTCGGCGTGAACGCCTCATCCGGCCTACAAAAACGTGCAAATTCAATAGATTGCAGATATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGCAATCAGt                              <  1:665351/149‑1 (MQ=21)
                                                                                                                       aGATTGTGACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGtct                            <  1:374609/149‑1 (MQ=255)
                                                                                                                            gtgACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGc                       <  1:574672/149‑1 (MQ=255)
                                                                                                                             tgACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGGCTACAAAACCATGCAAATTAACTAGATTGAAGAGAATACGTAGGACTGCTAAATGCAACGCGTCAGGCAATTGTGCGGCTGTTATCAGTCTCGAGCg                      >  2:427709/1‑149 (MQ=17)
                                                                                                                               aCATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCTGCGTTTGTAATCAGTCTCGAGAggg                    >  1:573628/1‑149 (MQ=255)
                                                                                                                                cATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGt                   <  1:588158/149‑1 (MQ=255)
                                                                                                                                cATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCATAGCGCAGAAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGt                   >  1:497706/1‑149 (MQ=255)
                                                                                                                                 aTAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTc                  >  1:127444/1‑149 (MQ=255)
                                                                                                                                  tAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCa                 <  2:365274/149‑1 (MQ=255)
                                                                                                                                      gcgcTTTGTTCAGGTCGGAGGCGGCGTGAACGCCTGACCCACCCAACGCGGTTATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGttt             <  1:703752/149‑1 (MQ=21)
                                                                                                                                       cgcTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCggg                    <  2:423582/141‑1 (MQ=255)
                                                                                                                                       cgcTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCggg                    >  1:423582/1‑141 (MQ=255)
                                                                                                                                       cgcTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTa            <  2:494020/149‑1 (MQ=255)
                                                                                                                                              ttCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGccc     >  1:230306/1‑149 (MQ=255)
                                                                                                                                                 aTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTCTACTGGCCCGCt  >  2:121539/1‑149 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
TGATGGCCTGGGTGTTTACCCTTCCGGCTGCGGTACTGCTTTCCGGCGGGCTGTACTGGCTCTCCTTGCAGTTCCTGTAATCGTACGCACCAAAACGAGCGGGTCAGCTGGCCCGCTTCAGATTGTGACATAGTGCGCTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAACATGCAAATTCAATAGATTGCAGAGATTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGCGTTTGTAATCAGTCTCGAGCGGGTCAGTTTACTGGCCCGCT  >  NC_000913_3_pae_tpiA/3639062‑3639355

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.