| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 707905 = | 52 (1.300) | 7 (0.180) | 5/264 | 4.8 | 12.4% | noncoding (136/165 nt) | RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913_3_pae_tpiA | = 2133431 | NA (NA) | intergenic (‑34/+59) | wcaA/wzc | putative glycosyl transferase/colanic acid production tyrosine‑protein kinase; autokinase; Ugd phosphorylase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTATTTAATTATGTTTTGTTATTTTAAATTTATTTTATGGATAAATTGCGAAGCGGAATTAATTCGCGAAGAAAAGCAGAAAAAACGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/708059‑707905‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTGGAACCGCCAACAACTGGCGATTCGGGCAATAAAATCGGTTTTGCGCCAGGACTACAGCAACTGG < NC_000913_3_pae_tpiA/2133431‑2133293 TTATTTAATTATGTTTTGTTATTTTAAATTTATTTTATGGATAAATTGCGAAGCGGAATTAATTCGCGAAGAAAAGCAGAAAAAACGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTTGCCGGATGCGGCGTGAACGCTTTA > 2:707626/1‑149 TATTTAATTATGTTTTGTTATTTTAAATTTATTTTATGGATAAATTGCGAAGCGGAATTAATTCGCGAAGAAAAGCAGAAAAAACGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTTGCCGGATGCGGCGTGAACGCCTTAT < 1:229469/149‑1 TTAATTATGTTTTGTTATTTTAAATTTATTTTATGGATAAATTGCGAAGCGGAATTAATTCGCGAAGAAAAGCAGAAAAAACGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTTGCCGGATGCGGCGTGAACGCCTTATCCG < 2:613106/149‑1 TTAATTATGTTTTGTTATTTTAAATTTATTTTATGGATAAATTGCGAAGCGGAATTAATTCGCGAAGAAAAGCAGAAAAAACGCCGCTGAACGCCGCGTTTTGGATTGTTTGCTGTTTCTTGCCGGATGCGGCGTGAACGCCTTATCCG < 1:115598/149‑1 AATTAGTTTTTGTTATTTTAAATTTATTTTATGGATAAATTGCGAAGCGGAATTAAGTCGCGAAGAAAAGCAGAAAAAACGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGC < 2:351247/149‑1 TTATGTTTTGTTATTTTAAATTTATTTTATGGATAAATTGCGAAGCGGAATTAATTCGCGAAGAAAAGCAGAAAAAACGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTTGCCGGATGCGGCGTGAAAGCCTTATCCGtcct > 2:535687/1‑145 TTATGTTTTGTTATTTTAAATTTATTTTATGGATAAATTGCGAAGCGGAATTAATTCGCGAAGAAAAGCAGAAAAAACGCCGCTGAACGCGACGTTTTGGATTGTTTGCTGTTTCTTTCCGAATGCGGCTTGAAAGCCTTATCCGGCAt > 1:122353/1‑148 TTGCCGGATGCGGCGTGAACGCCTTATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTGGAACCGCCAACAACTGGCGATTCGGGCAATAAAATCGGTTTT > 2:81601/1‑149 TTGCCGGATGCGGCGTGAACGCCTTATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTGGAACCGCCAACAACTGG > 1:567854/1‑124 TTGCCGGATGCGGCGTGAACGCCTTATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTGGAACCGCCAACAACTGG < 2:567854/124‑1 TTGCCGGATGCGGCGTGAACGCCTTATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAAT > 1:709003/1‑92 TTGCCGGATGCGGCGTGAACGCCTTATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAAT < 2:709003/92‑1 CTTATCCGGCAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTGGAACCGCCAACAACTGGCGATTCGGGCAATAAAATCGGTTTTGCGCCAGGACTACAGCAACTGG < 1:81601/149‑1 TTATTTAATTATGTTTTGTTATTTTAAATTTATTTTATGGATAAATTGCGAAGCGGAATTAATTCGCGAAGAAAAGCAGAAAAAACGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/708059‑707905‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcAAGCAAACCAGCTCATAAGCCGGGAGAACAACCTATGAAAAACAATCCGCTGATCTCAATCTATATGCCGACCTGGAACCGCCAACAACTGGCGATTCGGGCAATAAAATCGGTTTTGCGCCAGGACTACAGCAACTGG < NC_000913_3_pae_tpiA/2133431‑2133293 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |