| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 707905 = | 52 (1.300) | 7 (0.180) | 5/264 | 4.8 | 12.4% | noncoding (136/165 nt) | RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913_3_pae_tpiA | = 2133431 | NA (NA) | intergenic (‑34/+59) | wcaA/wzc | putative glycosyl transferase/colanic acid production tyrosine‑protein kinase; autokinase; Ugd phosphorylase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAATAACAAAACATAATT > NC_000913_3_pae_tpiA/707758‑708053 | ttttAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGc > 2:92897/1‑149 (MQ=255) tttAAGTTTAGCTATGTCTGATTGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGcc < 1:625086/149‑1 (MQ=255) tttCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGGTTGCGTGCTTTTGTAGGCCGGATaa < 2:338641/149‑1 (MQ=255) ttCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAg < 1:611789/149‑1 (MQ=255) ttCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAg < 1:640913/149‑1 (MQ=255) tcgtcaTGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGCACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAgg < 2:31689/144‑1 (MQ=255) gCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCCATATATTGAGTTTGCGTGCTTTTTTAGGCCGGATAAAGCg > 2:402641/1‑149 (MQ=255) ttGCCGGATGCGACGTAAACGCCCCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAgg < 1:560739/143‑1 (MQ=21) cgcaTGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGATAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGCTCTCTGCAATATATTGAGTTTGTGTGCTTTTGTTGGTCGGATAAGGCGTTCAcgc > 2:537062/4‑149 (MQ=25) tGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCg > 1:118441/1‑129 (MQ=255) tGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCg < 2:118441/129‑1 (MQ=255) gggCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATc > 1:117427/1‑149 (MQ=255) tACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCggatag > 2:178188/1‑145 (MQ=255) aCGTCGCATCCGGCAAGGAACAGACCAACATATACAAACGATAACTTTACAGATGCGCTACTCATATCAGGCCGACATGATCTCTGCAGGATGTGGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGa < 2:62793/149‑1 (MQ=18) aCGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGa < 2:64536/149‑1 (MQ=255) gTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGaaa > 2:213639/1‑149 (MQ=255) gtcgggCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGAGGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTTAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCa < 2:290353/145‑1 (MQ=255) aaGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATc < 2:517178/149‑1 (MQ=255) aaGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATc < 1:92897/149‑1 (MQ=255) gaccAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCaa > 2:188055/4‑149 (MQ=255) gAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTGCAAGCCGCATCCGGCAAGAACCAGCAAAAAATCCaa > 2:680371/1‑149 (MQ=255) aCAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCaaaa < 1:188055/149‑1 (MQ=255) aCAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTACGTGCTTTTGTAGGCCGCATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAAcgcc > 1:654321/1‑149 (MQ=255) aaaCAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAAcgccgc > 2:230237/1‑149 (MQ=255) aaaCGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGtt > 2:221983/1‑142 (MQ=255) aaaCGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGtt < 1:221983/142‑1 (MQ=255) aaaCGCCAAATATCCTGATGCGCTACGCTTATCAGGACTACATGATCTCTGCAATCTATTCAGCTTTCGTGCTTTTGTAGCCCGGATAAGGCGTACACGCCGCATCCGGCAAGAAACAGCAAACAATCCAGAACCCCGCGATAAgcgac > 2:491962/1‑147 (MQ=17) cTACATTGACTGATGCGCTACGATTATCAGGCCTACATGGTCTATGCAGTGTTGTGAGGTTGCGTGCTTTTGCAGGCCGGATAAGGCGGTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGtttt < 1:346125/149‑1 (MQ=25) cTAAGTTGCCTGATGCTCTAGGCTGATCAGGCCTACAGGATCTCTGCAATATATTGAGTTTTCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACGAAACAGCAAACAATCCAAAACGCCGCTGAACGCGGCGtttt < 2:670868/149‑1 (MQ=18) ccTGATCCGCTACGCTTATCAGGCCTACATGATCTCTGCCATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCACGAAACAGCAAACAATCCAACACGCCGCGTTCAGCGGCGTCTTTTCTCCtt > 2:408416/1‑149 (MQ=21) cTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCttt > 2:539974/1‑149 (MQ=255) gCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGaatt > 2:161995/1‑149 (MQ=255) cATGATCTCTGCAATATATTGAGTTTTCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCa > 2:567017/1‑64 (MQ=255) cATGATCTCTGCAATATATTGAGTTTTCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCa < 1:567017/64‑1 (MQ=255) aTGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCaa > 1:502872/1‑149 (MQ=255) tctcTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAGTCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTa > 2:481905/1‑149 (MQ=255) ctGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATcc > 1:707626/1‑149 (MQ=255) tGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCa > 2:485243/1‑149 (MQ=255) cAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGGATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCata < 2:672891/149‑1 (MQ=255) aaTATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCataa < 1:224120/149‑1 (MQ=255) tatatTGAGTTTGCGTGCTTTTGTAGGCCGGATATGGCGACGATTCGCCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCataaaa < 1:490835/149‑1 (MQ=255) tatatTGAGTTTGCGTGCTTTGGTAGGCAGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCataaaa < 2:243808/149‑1 (MQ=255) atTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCataaaataa > 1:557192/1‑149 (MQ=255) ttGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCataaaataaa > 1:653549/1‑149 (MQ=255) gAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAAtt > 2:211958/1‑149 (MQ=255) tttGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGAGTTTTTTCTGCATTTCTTCGCGAATTAATTAGGCCTAGCAATTGGTGCTTAAAATAAATTTag > 2:140059/1‑148 (MQ=37) tttGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAACCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTaa > 2:51705/1‑149 (MQ=255) tttGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAATAACaaaa < 1:347161/149‑1 (MQ=255) gTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGt < 2:341915/75‑1 (MQ=255) gTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGt > 1:341915/1‑75 (MQ=255) atgCCGGATAAGGCTTTCAAGCCGCATTCGGAAAGAAACAGCAAACAATCCAAAACGTCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAATAACAAAACATaa < 1:122353/147‑1 (MQ=255) aGGACGGATAAGGCTTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAATAACAAAACATaa < 2:535687/149‑1 (MQ=255) ggCCGGATAAGGCGTGCCCGCCGCATCGGGCAAGAAACAGCAAACAATCCACAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTGATTCCGCTTCGCAATTTATCCGTTTTAGAAATTTAAAATAACAAAACATAAt < 1:174120/149‑1 (MQ=255) gCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGACTTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAATAACAAAAACTAAtt > 2:351247/1‑149 (MQ=255) | TTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATCTCTGCAATATATTGAGTTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAGAAACAGCAAACAATCCAAAACGCCGCGTTCAGCGGCGTTTTTTCTGCTTTTCTTCGCGAATTAATTCCGCTTCGCAATTTATCCATAAAATAAATTTAAAATAACAAAACATAATT > NC_000913_3_pae_tpiA/707758‑708053 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |