| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 1062575 | NA (NA) | 5 (0.130) | 5/268 | 4.9 | 14.7% | coding (281/306 nt) | cbpM | modulator of CbpA co‑chaperone |
| ? | NC_000913_3_pae_tpiA | = 1062596 | 29 (0.750) | coding (260/306 nt) | cbpM | modulator of CbpA co‑chaperone | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/1062423‑1062575‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaaaACCGCCTGCTGCGCCAGCGGCTTTCCCGGTTTGTAGCTCATCCGTGATGTGTGTTTGCCGGATGCGATGACGCATCTTAACCGGTCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGC < NC_000913_3_pae_tpiA/1062596‑1062450 GCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGCAACTGTAATCTTTGTAGACCGGTTAAGATGCCTCATCCCATCCGGCAAACACACACCACGGATCACCTACAAACCGG > 2:28825/1‑149 GTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCCAACACACCTCCCGGCTGAGCTACCAACCGAGAAAACCGC > 2:223711/1‑149 TTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAACCGCCTGCTGCGCCAGCGGCTTTCCCGGTTTGTAGCTCATCCGTGA < 1:476987/144‑1 TTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAACCGCCTGCTGCGCCAGCGGCTTTCCCGGTTTGTAGCTCATCCGTGA > 2:476987/1‑144 GTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAACCGCCTGCTGCGCCAGCGGCTTTCCCGGTTTGTAG > 1:628070/1‑96 GTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAACCGCCTGCTGCGCCAGCGGCTTTCCCGGTTTGTAG < 2:628070/96‑1 AAACCGCCTGCTGCGCCAGCGGCTTTCCCGGTTTGTAGCTCATCCGTGATGTGTGTTTGCCGGATGCGATGACGCATCTTAACCGGTCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGC > 2:43555/1‑149 GCGTTTAGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/1062423‑1062575‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaaaACCGCCTGCTGCGCCAGCGGCTTTCCCGGTTTGTAGCTCATCCGTGATGTGTGTTTGCCGGATGCGATGACGCATCTTAACCGGTCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGC < NC_000913_3_pae_tpiA/1062596‑1062450 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |