New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 1062575	NA (NA)	5 (0.130)	5/268	4.9	14.7%	coding (281/306 nt)	cbpM	modulator of CbpA co‑chaperone
	?	NC_000913_3_pae_tpiA	= 1062596	29 (0.750)					coding (260/306 nt)	cbpM	modulator of CbpA co‑chaperone
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTC  >  NC_000913_3_pae_tpiA/1062432‑1062717                                                                                                                                                |                                                                                                                                               gTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCCAACACACCTCCCGGCTGAGCTACCAACCGAGAAAACCGc                                                                                                                                           >  2:223711/1‑149 (MQ=39)  tCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCt                                                                                                                                          <  1:306938/149‑1 (MQ=255)             aTTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGGTAAGATGCGTCATCGCATCCGACAAACACACACCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAgg                                                                                                                               >  2:40421/1‑149 (MQ=255)              ttATGGCGCAGTTGCCGGATGCGGCGTGATTGTCTTATGCGGTCCACAGGAACTGTAATCTTTGTAGACAGGTTAAGGTGGGTCGTCGCAGCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGc                                                                                                                              <  1:318658/149‑1 (MQ=255)                aTGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCgg                                                                                                                            <  1:513082/149‑1 (MQ=255)                   gcgcAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGttt                                                                                                                         <  2:43555/149‑1 (MQ=255)                         ttGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGc                                                                                                                   >  1:408813/1‑149 (MQ=255)                         ttGCCGCATGCGGCGTCAAAGTCTTACCTGGCCCCCAGGAAATGTAATCTTTGTAGACCGGTTACGATGAGGCCCCGCATCCGGCATATACACGTCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGc                                                                                                                   <  1:526717/149‑1 (MQ=255)                              ggATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAg                                                                                                              <  2:698659/149‑1 (MQ=255)                                       gTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGCGCTACAAACCGGGAAAGCCGCTAGCGCAGCAGGCGGTTTTCGTGATTCAGTTGAGCAat                                                                                                     >  1:149733/1‑149 (MQ=255)                                         gAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAatat                                                                                                   <  2:163604/149‑1 (MQ=255)                                          aaCGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATatc                                                                                                  >  2:426859/1‑149 (MQ=255)                                           aCGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGCTGAGCTACAAACCGGGAAACCCGCTGGCGCACCAGGCGGTTTTCCTGCTTCAGGTGCGCAATatca                                                                                                 >  2:229871/1‑149 (MQ=255)                                                   tCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACCCACATCCCCGATGAGCTCCAAACCGCGACAGCCGCTCGCCCACCAGCCGGCCTTCCTCCCTCCGGCGCGCCCTATCACCCATTaa                                                                                         >  2:97170/1‑149 (MQ=255)                                                       gCCCACAGGAACTGTAATCTTTGTAGACCGGTGAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTc                                                                                     <  1:141363/149‑1 (MQ=255)                                                        cccACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCa                                                                                    <  2:664432/149‑1 (MQ=255)                                                                              tAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCa                                                              <  2:22991/149‑1 (MQ=255)                                                                                     gTTAAGATGGGTCAGCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCaga                                                       <  1:219148/149‑1 (MQ=255)                                                                                     gTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGTATGCGATACAAACCGGGAACGCCGCTCGCGCAGCAGGCGGTTTTCCTGCTCCATGTGCGCTATATCATCTATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCaga                                                       <  2:564044/149‑1 (MQ=255)                                                                                     gTTAAGATGCGTCAGCGCATCCGGCAAACACAAATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCaga                                                       <  2:258275/149‑1 (MQ=255)                                                                                          gATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAg                                                  >  1:120890/1‑149 (MQ=255)                                                                                           aTGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGt                                                 <  2:120890/149‑1 (MQ=255)                                                                                                      cATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAg                                      <  1:426859/149‑1 (MQ=255)                                                                                                        tCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGa                                           <  2:360166/142‑1 (MQ=255)                                                                                                        tCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGa                                           >  1:360166/1‑142 (MQ=255)                                                                                                              aaaCACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCaa                                                                                                      <  1:97958/77‑1 (MQ=255)                                                                                                              aaaCACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCaa                                                                                                      >  2:97958/1‑77 (MQ=255)                                                                                                                  acacaTCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACCCAGGCGTACcgcccg                          >  2:586984/1‑149 (MQ=255)                                                                                                                    acaTCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAACCAGTTCTTGACGCAGGCGTACCGCGCGtt                        >  2:131997/1‑149 (MQ=255)                                                                                                                         aCGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGcacc                   <  1:40421/149‑1 (MQ=255)                                                                                                                                          ggggAAAGCCGCTGGCGCGGCAGGCGGTTTTCGTGCTTCAGTTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGAGCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGgtc  <  2:366219/148‑1 (MQ=255)                                                                                                                                                |                                                                                                                                               GTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAAACACACATCACGGATGAGCTACAAACCGGGAAAGCCGCTGGCGCAGCAGGCGGTTTTCCTGCTTCAGGTGCGCAATATCATCCATTAACGTCAGCGCCACCGCGATCCCCGGCCAGTCCAGAGCCAGTTCATGACGCAGGCGTACCGCGCGTTGCACCACAATGGCGGCATGGTC  >  NC_000913_3_pae_tpiA/1062432‑1062717

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.