New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	2708664 =	72 (0.910)	3 (0.040)	3/274	NT	4.1%	coding (91/957 nt)	rseB	anti‑sigma E factor, binds RseA
	?	NC_000913_3_pae_tpiA	2708700 =	68 (0.850)					coding (55/957 nt)	rseB	anti‑sigma E factor, binds RseA
Rejected: Frequency below/above cutoff threshold.

GGTTATCGAGGCGTGCATGTCGATAACGCAGAGACTCAACACCCTGTTTATTGATGCTGATGAATGACAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGAATTCCTGGCACCTGTACAGCGGCTTGCTGGGTTTGCGCCTGCTCAAACTGAAGCTGTTCAGAGTG  >  NC_000913_3_pae_tpiA/2708553‑2708846                                                                                                                                                    |                                                                                                                                                   ggTTATCGAGGCGTGCATGTCGATAACGCAGAGACTCAACACCCTGTTTATTGATGCTGATGAATGACAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGGCCCGGACGCGGGAGTGGCTGAGGCGTTAGCa                                                                                                                                                   >  1:77651/1‑149 (MQ=255) ggTTATCGAGGCGTGCATGTCGATAACGCAGAGACTCAACACCCTGTTTATTGATGCTGATGAATGACAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACCCGGGAGTGGCCGAGGCGTTAGCa                                                                                                                                                   <  1:1234536/149‑1 (MQ=255)  gTTATCGAGGCGTGCATGTCGATAACGCAGAGACTCAACACCCTGTTTATTGATGCTGATGAATGACAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCag                                                                                                                                                  >  2:709946/1‑149 (MQ=255)   ttATCGCGGCGTGAATGTCGATAACGGCGAGACTCAACACCCTGTTTATTGCTGCTGATGAATGACAGCTCGTAATTCAGGGACCGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCaga                                                                                                                                                 <  2:725104/149‑1 (MQ=255)   ttATCGAGGCGTGCATGTCGATAACGCAGAGACTCAACACCCTGTTTATTGATGCTGATGAATGACAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCaga                                                                                                                                                 >  1:529623/1‑149 (MQ=255)         aGGCGTGCATGTCGATAACGCAGAGACTCAACCCCCTGTTTATTGATGCTGATGAATGACAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATaa                                                                                                                                           <  1:301516/149‑1 (MQ=255)           gCGTGCATGTCGATAACGCAGAGACTCAACCCCCTGTTTATTGATGCTGATGAATGACAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACa                                                                                                                                         <  2:570821/149‑1 (MQ=255)           gCGTGCATGTCGATAACGCAGAGACTCAACACCCTGTTTATTGATGCTGATGAATGACAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACa                                                                                                                                         <  1:662338/149‑1 (MQ=255)             gTGCATTTCGATAACGCAGAGACTCAACCCCCTGTTTATTGATGCTGATGAATGACAGCTCGTAATTCAATGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAgg                                                                                                                                       <  2:1237072/149‑1 (MQ=255)              tGCATGTCGATAACGCAGAGACTCAACACCCTGTTTATTGGTGCTGATGAATGACAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGGCGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGc                                                                                                                                      >  1:404477/1‑149 (MQ=255)               ccATGTCGATAACGCAGAGACTCAACCCCCTGTTTATTGATTCTGATGAATGCCAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCt                                                                                                                                     <  1:162567/148‑1 (MQ=255)                    tCGATAACGCAGAGACGCAGCAACCTGTTTATTGATGCTGATGAATGAAAGCTCGTAATTCAGAGAATGACTGGCCAGGTTCATATGCTATATCAACGACCACGCGACGGGAGGGGGCGCGATCTTAGCAGTAAATAACAGACTagagg                                                                                                                                >  2:20800/1‑145 (MQ=255)                       aTAACGCAGAGACTCAACACCCTGTTTATTGATGCTGATGAATGACAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCa                                                                                                                             <  1:392088/149‑1 (MQ=255)                          aCGCAGAGACTCAACACCCTGTTTATTGATGCTGATGAATGACAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTa                                                                                                                          <  1:186853/149‑1 (MQ=255)                           cGCAGAGACTCAACACCCTGTTTATTGATGCTGATGAATGACAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTaa                                                                                                                         <  2:733497/149‑1 (MQ=255)                               gagaCTCAACACCCTGTTTATTGATGCTGATGAATGACAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCACAGACTCACACGCTACCTGTCACTAATGAc                                                                                                                     >  2:428960/1‑149 (MQ=255)                                agaCTCAACACCCTGTTTATTGATGCTGATGAATGACAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACa                                                                                                                    >  2:1331880/1‑149 (MQ=255)                                   cTCAACACCCTGTTTATTGATGCTGATGAATGACAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATgg                                                                                                                 <  2:816213/149‑1 (MQ=255)                                    tCAACACCCTGTTTATTGATGCTGATGAATGCCAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGACTACCTGTCCCTAATCAccttgc                                                                                                                >  2:379851/1‑144 (MQ=255)                                    tCAACACCCTGTTTATTGATGCTGATGAATGACAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGGGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACCTGGc                                                                                                                >  2:158015/1‑149 (MQ=255)                                    tCAACACCCTGTTTATTGATGCTGATGAATGACAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGCGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGc                                                                                                                >  2:885989/1‑149 (MQ=255)                                    tCAACACCCTGTTTATTGATGCTGATGAATGACAGCTCGTAATTCAGTGACTCACCCCCCCCCCACATTTGCTGTAGTTGTGTCCCGGCCGCGGGACTGGCCGCTTCGTTAGCAGAGAATCACAGGCTACCTGTCACTACTGACATGGc                                                                                                                >  1:1402718/1‑149 (MQ=255)                                          cccTGTTTATTGATGCTGATGAATGACAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTGACTAATGACATGGCCACCCa                                                                                                          >  2:1383420/1‑149 (MQ=255)                                          cccTGTTTATTGATGCTGATGAATGACAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCa                                                                                                          >  1:1353303/1‑149 (MQ=255)                                               tttATTGATGCTGATGAATGACAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCTCTAATGACATGGCAAACCAAAGtt                                                                                                     <  1:1412171/149‑1 (MQ=255)                                               tttATTGATGCTGATGAATGACAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTGATGCAATGGCAAACCAAAggt                                                                                                     >  1:874139/1‑147 (MQ=255)                                               tttATCGAGGCTGATGAATGACAGGTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGtt                                                                                                     <  1:1180625/149‑1 (MQ=255)                                                ttATTGATGCTGATGAATGACAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTg                                                                                                    <  2:380133/149‑1 (MQ=255)                                                   ttGATGCTGATGAATGACAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCtt                                                                                                 <  1:1331663/149‑1 (MQ=255)                                                       tGCTGATGAATGACAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCAtt                                                                                             >  1:644561/1‑149 (MQ=255)                                                          tgatgaATGACAGCTCGTAATTCAGTTACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACt                                                                                          <  1:1320328/149‑1 (MQ=255)                                                          tgatgaATGACAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAAGGAGCTGGCAAACCAAGGTGGCTTctctcct                                                                                          >  2:401278/1‑143 (MQ=255)                                                            atgaatgaCAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGc                                                                                        <  2:1041291/149‑1 (MQ=255)                                                             tgaatgaCAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCg                                                                                       <  1:376020/149‑1 (MQ=255)                                                             tgaatgaCAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCg                                                                                       <  2:1144999/149‑1 (MQ=255)                                                                  gaCAGCTCGTAATTCAGTGACGGGCTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGc                                                                                  <  1:1380950/149‑1 (MQ=255)                                                                     ggaacGTAATTCAGTGACTGACTGGCCAGGTGCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGtt                                                                               >  1:988062/5‑149 (MQ=255)                                                                     aGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAACGACCTCGAAAACCAAAGTTGCTTCCTTACTGCGATTGCttt                                                                               >  1:263391/1‑149 (MQ=255)                                                                      gCTCTTAATTCAGTGACTGGCTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTc                                                                              <  2:1067541/149‑1 (MQ=255)                                                                       cTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACGTGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTcc                                                                             >  2:338214/1‑149 (MQ=255)                                                                        tCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTTGAGGAACGCCACGGACGCGTGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTcat                                                                            >  2:1371376/1‑147 (MQ=255)                                                                           tAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTaaa                                                                         <  1:1264113/149‑1 (MQ=255)                                                                           tAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTaaa                                                                         >  2:447456/1‑149 (MQ=255)                                                                              ttCAGTGACTGACTGGCCAGGTTTATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGtt                                                                      <  2:530640/149‑1 (MQ=255)                                                                              ttCAGTGACTGACTGGCCAGGTTTATCTGCTGTAATAACGCAAAGCTTTCAAGTTTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGtt                                                                      <  1:1390843/149‑1 (MQ=255)                                                                               tCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGttt                                                                     <  2:765742/149‑1 (MQ=255)                                                                               tCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATAGCAAACCAAAGTTGCAGCATTAGTGCGATTGCGTGCCTAAAAttt                                                                     >  2:1393469/1‑149 (MQ=255)                                                                                   tgactgacTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGAAt                                                                 >  2:501860/1‑149 (MQ=255)                                                                                      ctgactgGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGAATTcc                                                              <  1:420288/149‑1 (MQ=255)                                                                                       tgactgGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACGAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGAATTCCt                                                             <  1:301560/149‑1 (MQ=255)                                                                                              ccAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGAATTCCTGGCACCt                                                      <  1:907134/149‑1 (MQ=255)                                                                                                aGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGAATTCCTGGCACCTGt                                                    >  2:1094583/1‑149 (MQ=255)                                                                                                    tCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGAATTCCTGGCACCTGTACAg                                                >  1:1338447/1‑149 (MQ=255)                                                                                                     cagctgctgTAATAACGCCCCGGACTCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGAATTCCTGGCACCTGTACAGc                                               <  2:62555/146‑1 (MQ=255)                                                                                                      aTCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGAATTCCTGGCACCTGTACAGCg                                              <  1:709946/149‑1 (MQ=255)                                                                                                       tCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGAATTCCTGGCACCTGTACAGCgg                                             >  1:132309/1‑149 (MQ=255)                                                                                                       tCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGAATTCCTGGCACCTGTACAGCgg                                             >  1:796121/1‑149 (MQ=255)                                                                                                          gctgTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGAATTCCTGGCACCTGTACAGCGGCtt                                          <  1:1399978/149‑1 (MQ=255)                                                                                                            tgTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGAATTCCTGGCACCTGTACAGCGGCTTGc                                        >  1:358842/1‑149 (MQ=255)                                                                                                             gTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAATGTTTGAATTCCTGGCACCTGTACAGCCGCTTGCt                                       <  1:1016217/149‑1 (MQ=255)                                                                                                               aataaGGCCCCGGACGCGGGAGTGGCCGATGCGTTAGCATAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGAATTCCTGGCACCTGTACAGCGGCTTGCTgg                                     <  2:206631/149‑1 (MQ=255)                                                                                                               aataaCGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGAATTCCTGGCACCTGTACAGCGGCTTGCTgg                                     <  1:536477/149‑1 (MQ=255)                                                                                                               aataaCGCCCCCGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGAATTCCTGGCACCTGTACAGCGGCTTGCTgg                                     <  1:1245567/149‑1 (MQ=255)                                                                                                                 taacgcctcggccactcccgcgtccggggcgttagCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGAATTCCTGGCACCTGTACAGCGGCTTGCTGGGt                                   >  2:597434‑M2/36‑149 (MQ=255)                                                                                                                  aaCGCCCCGGACGCGTGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGAATTTCTGGCACCTGTACAGCGGCTTGCTGGGtt                                  >  1:127759/1‑149 (MQ=255)                                                                                                                     gcctcggccactcccgcgtccggggcgttatCAGAGAATAACAGGCTACCTGTCa                                                                                                                             >  1:425012‑M2/32‑55 (MQ=255)                                                                                                                     gcctcggccactcccgcgtccggggcgttatCAGAGAATAACAGGCTACCTGTCa                                                                                                                             <  2:425012‑M2/24‑1 (MQ=255)                                                                                                                       cccGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTACAAAAGTCAGAGTTCTTGGCACCTGTACAGCGGCTTGCTGGGTGTgcgc                             >  1:963828/1‑149 (MQ=255)                                                                                                                         cGGACTCGTGAGTGGCCGAGGCGATAGCAGAGAATAATAGGCTACCTGCCCCTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGTGTTCCTGCCACCTGTATAGCGGCTTGCTGGGTTTGCGCCt                           <  2:244128/149‑1 (MQ=255)                                                                                                                             cgcgGGAGTGGCCGAGGCGGTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGAATTCCTGGCACCTGTACAGCGGCTTGCTGGGTTTGCGCCTGCTc                       <  2:275780/149‑1 (MQ=255)                                                                                                                                 ggAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGAATTCCTGGCACCTGTACAGCGGCTTGCTGGGTTTGCGCCTGCTCAAAc                   <  2:1353303/149‑1 (MQ=255)                                                                                                                                 ggAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGAATTCCTGGCACCTGTACAGCGGCTTGCTGGGTTTGCGCCTGCTCAAAc                   >  1:628027/1‑149 (MQ=255)                                                                                                                                     tGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGAATTCCTGGCACCTGTACAGCTACTTGCTGGGTTTGCGCCTGCTCAAACTGaa               <  1:733247/149‑1 (MQ=255)                                                                                                                                      ggCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGAATTCCTGGCACCTGTACAGCGGCTTGCTGGGTTTGCGCCTGCTCAAACTGAAg              >  1:8695/1‑149 (MQ=255)                                                                                                                                          gAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGCTTGCGTTCCTAAAGTTTGAATTCCTGGCACCTGTACAGCGGCTTGCTGGGTTTGCGCCTGCTCAAACTGACGCTGt          >  1:97245/1‑149 (MQ=255)                                                                                                                                             gCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGAATTCCTGGCACCTGTACAGCGGCTTGCTGGGTTTGCGCCTGCTCAAACTGAAGCTGTTCa       <  1:599169/149‑1 (MQ=255)                                                                                                                                               gTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGAATTCCTGGCACCTGTACAGCGGCTTGCTGGGTTTGCGCCTGCTCAAACTGAAGCTGTTCaga     <  2:1311277/149‑1 (MQ=255)                                                                                                                                               gTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGAATTCCTGGCACCTGTACAGCGGCTTGCTGGGTTTGCGCCTGCTCAAACTGAAGCTGTTCaga     <  2:1260126/149‑1 (MQ=255)                                                                                                                                                  aGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGCATCAGTTGCGAATGTAGTAAACTTGGCTGGGTTTGCGCCTGCTCAAACTGAAGCTGTTCAGAGTg  <  1:1403729/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GGTTATCGAGGCGTGCATGTCGATAACGCAGAGACTCAACACCCTGTTTATTGATGCTGATGAATGACAGCTCGTAATTCAGTGACTGACTGGCCAGGTTCATCTGCTGTAATAACGCCCCGGACGCGGGAGTGGCCGAGGCGTTAGCAGAGAATAACAGGCTACCTGTCACTAATGACATGGCAAACCAAAGTTGCTTCATTACTGCGATTGCGTTCCTAAAGTTTGAATTCCTGGCACCTGTACAGCGGCTTGCTGGGTTTGCGCCTGCTCAAACTGAAGCTGTTCAGAGTG  >  NC_000913_3_pae_tpiA/2708553‑2708846

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.