| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 3908513 = | 141 (1.140) | 20 (0.170) | 17/250 | 11.7 | 13.0% | intergenic (‑147/+36) | pstB/pstA | phosphate ABC transporter ATPase/phosphate ABC transporter permease |
| ? | NC_000913_3_pae_tpiA | 4314206 = | 133 (1.120) | intergenic (+93/+54) | yjdP/phnP | putative periplasmic protein/5‑phospho‑alpha‑D‑ribosyl 1,2‑cyclic phosphate phosphodiesterase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCCCGTTTGCGGAATGGCAGCAATTGGCCTGGGCCGGGGTATTGATCATTACCCTGTGCGTACTGCTGCTGAACATTCTGGCGCGCGTTGTTTTTGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/3908664‑3908513‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctcGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGGCCAGCGCGCACATTCCCTCTCATCACGCCACCCCAATCTCCATCCCATCAAACCCCACCTCAAACCCTGACGGTAGTGCGTTTTCCATCAGCCACGCATCAAACTGGTGGCTGAT > NC_000913_3_pae_tpiA/4314206‑4314352 GCCCGTTTGCGGAATGGCAGCAATTGGCCTGGGCCGGGGTATTGATCATTACCCTGTGCGTACTGCTGCTGAACATTCTGGCGCGCGTTGTTTTTGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCC > 3:247534/1‑150GCCCGTTTGCGGAATGGCAGCAATTGGCCTGGGCCGGGGTATTGATCATTACCCTGTGCGTACTGCTGCTGAACATTCTGGCGCGCGTTGATTTTGCAAAGAATAAAAACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCC > 1:1301059/1‑150 CAGCAATTGGCCTGGGCCGGGGTATTGATCATTACCCTGTGCGTACTGCTGCTGAACATTCTGGCGCGCGTTGTTTTTGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCCTCGCCCCTCTGGGGAGA > 2:266135/1‑150 GCAATTGGCCTGGGCCGGGGTATTGATCATTACCCTGTGCGTACTGCTGCTGAACATTCTGGCGCGCGTTGTTTTTGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCCTCGCCCCTCTGGGGAGAGG < 1:270287/150‑1 CAATTGGCCTGGGCCGGGGTATTGATCATTACCCTGTGCGTACTGCTGCTGAACATTCTGGCGCGCGTTGTTTTTGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCCTCGCCCCTCTGGGGAGAGGG < 1:266135/150‑1 CCTGGGCCGGGGTATTGATCATTACCCTGTGCGTACTGCTGCTGAACATTCTGGCGCGCGTTGTTTTTGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCCTCGCCCCTCTGGGGAGAGGGTTAGGGT < 1:1312500/150‑1 CCTGGGCCGGGGTATTGATCATTACCCTGTGCGTACTGCTGCTGAACATTCTGGCGCGCGTTGTTTTTGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCCTCGCCCCTCTGGGGAGAGGGTTAGGGT < 2:797579/150‑1 GGCCGGGGTATTGATCATTACCCTGTGCGTACTGCTGCTGAACATTCTGGCGCGCGTTGTTTTTGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGG < 1:106404/150‑1 GCCGGGGTATTGATCACTGCCCTGTGCGTACTGCTGCTGAACATTCTGGCGCGCGTTGTTTTTGCGAAGAATAAACACGGTTGATAGTGCTGACACGGTTTTCCCCTCACCCTAACCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGG < 2:787744/150‑1 TACCCTGTGCGTACTGCTGCTGAACATTCTGGCGCGCGTTGTTTTTGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGG < 1:624786/133‑1 TACCCTGTGCGTACTGCTGCTGAACATTCTGGCGCGCGTTGTTTTTGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGG > 2:624786/1‑133 AACATTCTGGCGCGCGTTGTTTTTGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCCT > 1:586389/1‑80 AACATTCTGGCGCGCGTTGTTTTTGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCCT < 2:586389/80‑1 TTCTGGCGCGCGTTGTTTTTGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACC < 4:859676/74‑1 TTCTGGCGCGCGTTGTTTTTGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACC > 3:859676/1‑74 GCGCGCGTTGTTTTTGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAG < 2:732940/100‑1 GCGCGCGTTGTTTTTGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAG > 1:732940/1‑100 cTAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCCTCGCCCCTCTGGGGAGAGGGTTA < 2:926626/70‑1 ATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCCTCGCCCCTCTGGGGAGAGGGTTA > 1:926626/1‑71 CCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGTTAGGGTGAGGGGGCCAGCGCGCACATTCCCTCTCATCACGCCACCCCAATCTCCATCCCATCAAACCCCACCTCAAACCCTGACGGTAGT > 4:759446/1‑125 CCTCACCCTAACCCTCTCCCCAGAGGGGCGAGGGTTAGGGTGAGGGGGCCAGCGCGCACATTCCCTCTCATCACGCCACCCCAATCTCCATCCCATCAAACCCCACCTCAAACCCTGACGGTAGT < 3:759446/125‑1 CTCACCCTAACCCTCGCCCCTCTGGGGAGAGGGTTAGG < 3:352184/38‑1 CTCACCCTAACCCTCGCCCCTCTGGGGAGAGGGTTAGG > 4:352184/1‑38 CCTAACCCTCTCCCCAGAGGGGCGAGGGTTAGGGTGAGGGGGCCAGCGCGCACATTCCCTCTCATCACGCCACCCCAATCTCCATCCCATCAAACCCCACCTCAAACCCTGACGGTAGTGCGTTTTCCATCAGCCACGCATCAAA > 4:616728/1‑145 CCTAACCCTCTCCCCAGAGGGGCGAGGGTTAGGGTGAGGGGGCCAGCGCGCACATTCCCTCTCATCACGCCACCCCAATCTCCATCCCATCAAACCCCACCTCAAACCCTGACGGTAGTGCGTTTTCCATCAGCCACGCATCAAA < 3:616728/145‑1 CCTAACCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGGCCAGCGCGCACATTCCCTCTCATCACGCCACACCAATCTCCATCCCATCAAACCCCACCTCAAACCCTGACGGTAGTGCGTTTTCCATCAGCCACGCATCAAACTGGT > 2:131766/1‑150 CCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGGCCAGCGCGCACATTCCCTCTCATCACGCCACCCCAATCTCCATCCCATCAAACCCCACCTCAAACCCTGACGGTAGTGCGTTTTCCATCAGCCACGCATCAAACTGGTGGCTG > 1:1277727/1‑150 CCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGGCCAGCGCGCACATTCCCTCTCATCACGCCACCCCAATCTCCATCCCATCAAACCCCACCTCAAACCCTGACGGTAGTGCGTTT < 1:84042/120‑1 CCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGGCCAGCGCGCACATTCCCTCTCATCACGCCACCCCAATCTCCATCCCATCAAACCCCACCTCAAACCCTGACGGTAGTGCGTTT > 2:84042/1‑120 CCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGGCCAGCGCGCACATTCCCTCTCATCACGCCACCCCAATCTCCATCCCATCAAACCCCACCTCAAACCCTGACGGTAGTGCGTTTTCCATCAGCCACGCATCAAACTGGTGGCTGA > 2:916779/1‑150 CCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGGCCAGCGCGCACATTCCCTCTCATCACGCCACCCCAATCTCCATCCCATCAAAC > 2:402604/1‑89 CCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGGCCAGCGCGCACATTCCCTCTCATCACGCCACCCCAATCTCCATCCCATCAAAC < 1:402604/89‑1 CTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGGCCAGCGCGCACATTCCCTCTCATCACGCCACCCCAATCTCCATCCCATCAAACCCCACCTCAAACCCTGACGGTAGTGCGTTTTCCATCAGCCACGCATCAAACTGGTGGCTGAT > 3:464684/1‑150 CTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGGCCAGCGCGCACATTCCCTC < 2:1084425/54‑1 CTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGGCCAGCGCGCACATTCCCTC > 1:1084425/1‑54 GCCCGTTTGCGGAATGGCAGCAATTGGCCTGGGCCGGGGTATTGATCATTACCCTGTGCGTACTGCTGCTGAACATTCTGGCGCGCGTTGTTTTTGCGAAGAATAAACACGGTTGATATTGCTGACACGGTTTTCCCCTCACCCTAACCCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/3908664‑3908513‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctcGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGGCCAGCGCGCACATTCCCTCTCATCACGCCACCCCAATCTCCATCCCATCAAACCCCACCTCAAACCCTGACGGTAGTGCGTTTTCCATCAGCCACGCATCAAACTGGTGGCTGAT > NC_000913_3_pae_tpiA/4314206‑4314352 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |