New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	1263650 =	69 (1.190)	24 (0.420)	23/272	2.4	26.9%	intergenic (‑150/‑64)	lolB/hemA	lipoprotein localization factor/glutamyl tRNA reductase
	?	NC_000913_3_pae_tpiA	= 1263818	63 (1.110)					coding (105/1257 nt)	hemA	glutamyl tRNA reductase

AGTGATGACAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAG  >  NC_000913_3_pae_tpiA/1263501‑1263794                                                                                                                                                      |                                                                                                                                                 aGTGATGACAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATc                                                                                                                                                  >  1:604823/1‑150 (MQ=255) aGTGATGACAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATc                                                                                                                                                  <  2:137316/150‑1 (MQ=255)  aagcagactaaccctatcaacgttggtattatttcccgcagacatgacccttttagcactcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCt                                                                                                                                                 >  1:217314‑M1/149‑150 (MQ=255)   tgatgaCAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCtt                                                                                                                                                <  1:372969/150‑1 (MQ=255)   tgatgaCAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCtt                                                                                                                                                <  1:55094/150‑1 (MQ=255)    gatgaCAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTGTGGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTa                                                                                                                                               <  1:174926/150‑1 (MQ=255)     cagactaaccctatcaacgttggtattatttcccgcagacatgacccttttagcactcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTAc                                                                                                                                              >  2:604823‑M1/146‑150 (MQ=255)       gactaaccctatcaacgttggtattatttcccgcagacatgacccttttagcactcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGc                                                                                                                                            >  3:22878‑M1/144‑150 (MQ=255)            gTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCt                                                                                                                                       <  2:119306/150‑1 (MQ=255)              cctatcaacgttggtattatttcccgcagacatgacccttttagcactcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgtcggataagctcgatcaggctcttgacagcctgCTTACGCATCCTGt                                                                                                                                     >  2:297168‑M1/137‑150 (MQ=255)               ctatcaacgttggtattatttcccgcagacatgacccttttagcactcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTa                                                                                                                                    >  1:389766‑M1/136‑150 (MQ=255)                   agaTACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTatgat                                                                                                                                <  4:390520/150‑1 (MQ=255)                    gaTACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTatgatg                                                                                                                               <  2:663/150‑1 (MQ=255)                    gaTACGTTGCAGTTATAAACCTTAATGCTAGCGTTACCGTCAGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGGatgatg                                                                                                                               >  4:11723/1‑150 (MQ=255)                      tccGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCa                                                                                                                             <  1:582455/148‑1 (MQ=255)                        cGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAg                                                                                                                           <  4:359999/150‑1 (MQ=255)                          ggtattatttcccgcagacatgacccttttagcactcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCa                                                                                                                         >  2:110152‑M1/125‑150 (MQ=255)                              ttatttcccgcagacatgacccttttagcactcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATc                                                                                                                                         <  2:418835‑M1/10‑1 (MQ=255)                              ttatttcccgcagacatgacccttttagcactcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATc                                                                                                                                         >  1:418835‑M1/121‑130 (MQ=255)                                 tttcccgcagacatgacccttttagcactcgttatcaaccataaaacggcacctgtatcgctgcgagaacgtctatcgttttcgcctgataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAAc                                                                                                                  >  3:11723‑M1/118‑150 (MQ=255)                                    aaCCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCt                                                                                                               >  1:297168/1‑150 (MQ=255)                                    aaCCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCt                                                                                                               >  4:22878/1‑150 (MQ=255)                                     aCCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTa                                                                                                              >  2:162401/1‑150 (MQ=255)                                      cccTTAATGCTAGCTTTACCTTCCGCTATCGGCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGTGCTCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTAt                                                                                                             <  4:312331/150‑1 (MQ=255)                                         ttAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCaa                                                                                                          >  3:103684/1‑150 (MQ=255)                                         ttAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCaa                                                                                                          <  1:557736/150‑1 (MQ=255)                                             atgacccttttagcactcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGtt                                                                                                      >  1:99908‑M1/106‑150 (MQ=255)                                             atgacccttttagcactcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGtt                                                                                                      >  1:23391‑M1/106‑150 (MQ=255)                                              gCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTg                                                                                                     <  3:230282/150‑1 (MQ=255)                                                  gCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGtat                                                                                                 >  2:23391/1‑150 (MQ=255)                                                    gTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGTGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGtatta                                                                                               >  4:261341/1‑150 (MQ=255)                                                        agcactcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGCCTAACCCTGTCAACGTTGGTATTATTTc                                                                                           <  2:600461‑M1/56‑1 (MQ=255)                                                        agcacccggtatctaccataacacggcacctgtatcgctgcgagcacgtgtatcgtgttcgtcgcataagctcgagcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTc                                                                                           >  2:579949‑M1/95‑150 (MQ=255)                                                           actcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCg                                                                                        >  2:305914‑M1/92‑150 (MQ=255)                                                             tcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgtancgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCAACCTGTATGATGGAAGCGCACGAACCCTAGCAACGGTGGTAGTATTGCCCgcc                                                                                      <  1:292206‑M1/61‑2 (MQ=255)                                                                     tCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGAc                                                                              >  1:579949/1‑150 (MQ=255)                                                                     tCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGAc                                                                              <  1:123289/150‑1 (MQ=255)                                                                             cAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAg                                                                      <  4:350393/150‑1 (MQ=255)                                                                                      ttAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTa                                                             >  1:162139/1‑150 (MQ=255)                                                                                         aTTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGCTGCAAGCAGACTAACCCCATCACCGTTGGTATTCTTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCa                                                          <  2:444471/150‑1 (MQ=255)                                                                                         aTTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCa                                                          >  2:216345/1‑150 (MQ=255)                                                                                           tGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAAc                                                        <  4:80443/150‑1 (MQ=255)                                                                                           tGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAAc                                                        <  1:216345/150‑1 (MQ=255)                                                                                            gCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAAcc                                                       >  1:287877/1‑150 (MQ=255)                                                                                             ccAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGCTCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCtt                                                                          >  4:284299/1‑130 (MQ=255)                                                                                             ccAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCtt                                                                          <  3:284299/130‑1 (MQ=255)                                                                                             ccAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCtt                                                                          <  3:86589/130‑1 (MQ=255)                                                                                             ccAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCtt                                                                          >  4:86589/1‑130 (MQ=255)                                                                                             ccAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACt                                                                  <  2:215971/138‑1 (MQ=255)                                                                                             ccAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACt                                                                  >  1:215971/1‑138 (MQ=255)                                                                                               aGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATa                                                    <  1:162401/150‑1 (MQ=255)                                                                                                 gagaacgtgtatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATaaa                                                  <  1:432945‑M1/97‑1 (MQ=255)                                                                                                      aaCGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTgg                                                                                                    <  1:485087/95‑1 (MQ=255)                                                                                                      aaCGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTgg                                                                                                    >  2:485087/1‑95 (MQ=255)                                                                                                      aaCGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGc                                             >  2:474132/1‑150 (MQ=255)                                                                                                      aaCGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCAGAAAACGGc                                             >  4:314321/1‑150 (MQ=255)                                                                                                         ggCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTc                                                                                           <  1:412648/101‑1 (MQ=255)                                                                                                         ggCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTc                                                                                           >  2:412648/1‑101 (MQ=255)                                                                                                          tatcgttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCt                                         <  1:557375‑M1/106‑1 (MQ=255)                                                                                                             ttCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTa                                      <  2:162139/150‑1 (MQ=255)                                                                                                              tCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTAt                                     <  3:153835/150‑1 (MQ=255)                                                                                                              tCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTAt                                     >  1:614558/1‑150 (MQ=255)                                                                                                               ttttcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATc                                    <  3:191093‑M1/111‑1 (MQ=255)                                                                                                                  tcgccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCt                                 <  1:291916‑M1/114‑1 (MQ=255)                                                                                                                   aaTTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTg                                >  1:130463/1‑150 (MQ=255)                                                                                                                   aaTTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTg                                >  1:130505/1‑150 (MQ=255)                                                                                                                    gccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGc                               <  3:197737‑M1/116‑1 (MQ=255)                                                                                                                     ttACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCg                              >  2:109046/1‑150 (MQ=255)                                                                                                                     ccggataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCg                              <  3:104865‑M1/117‑1 (MQ=255)                                                                                                                        gataagctcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCgaga                           <  3:190194‑M1/120‑1 (MQ=255)                                                                                                                         tCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGaa                          >  1:110152/1‑150 (MQ=255)                                                                                                                          ccAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAAc                         <  1:565497/150‑1 (MQ=255)                                                                                                                            aaaaGGGGGCGCTCTCTTTTATTGATCTTCCGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGCCCCTTTTAGCACTCGGTATCAACCATAAACCGGCACCTGTATCGCTGCGAGAACgt                       <  2:372265/150‑1 (MQ=255)                                                                                                                            aaaaGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACgt                       >  1:106906/1‑150 (MQ=255)                                                                                                                              aaGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACgtgt                     <  1:378025/150‑1 (MQ=255)                                                                                                                               tcgatcaggcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTa                    <  1:69222‑M1/127‑1 (MQ=255)                                                                                                                                gggggCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCa                                                                                                           <  3:254578/62‑1 (MQ=255)                                                                                                                                gggggCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCa                                                                                                           >  4:254578/1‑62 (MQ=255)                                                                                                                                       gcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTAt                                     <  1:308853‑M1/110‑1 (MQ=255)                                                                                                                                       gcgcttgacagcctgCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTAt                                     >  2:308853‑M1/16‑125 (MQ=255)                                                                                                                                        tctctTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTCACCCTAAAAACGTTGGTATTATTTCCCGAAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCg           >  2:370252/1‑150 (MQ=255)                                                                                                                                          tctTTTATTGATCTTTCGTATCCTGTATGATGCGAGCAGCCTAACCCTATCAACGTTGGTATTCTTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAACCGGCACCTGTATCGCTGCGGTAACGTGTATCGTTTTCGcc         <  2:391549/150‑1 (MQ=255)                                                                                                                                            ttttATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAAc                                                        >  4:187242/1‑101 (MQ=255)                                                                                                                                            ttttATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAAc                                                        <  3:187242/101‑1 (MQ=255)                                                                                                                                            ttttATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCgg       >  2:336994/1‑150 (MQ=255)                                                                                                                                             tttATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCg                                                                <  2:366751/92‑1 (MQ=255)                                                                                                                                             tttATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGATATTATTTCCCGCAGACATGACCCTTTTAGCACTCg                                                                >  1:366751/1‑92 (MQ=255)                                                                                                                                               tATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATa    >  2:217314/1‑150 (MQ=255)                                                                                                                                                aTTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATCATATCCGCCAGACATGGCCAAATAGGCTCTCACACTCTACAGAACACCGGCACCTGTATCGCTTCAAGAACATAAATCGTTTTCGCCGGATaa   >  2:99908/1‑150 (MQ=255)                                                                                                                                                 ttGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAg  <  1:474132/150‑1 (MQ=255)                                                                                                                                                    aTCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATc                  >  1:345316/1‑131 (MQ=255)                                                                                                                                                    aTCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATc                  <  2:345316/131‑1 (MQ=255)                                                                                                                                                    aTCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGa      <  1:597292/143‑1 (MQ=255)                                                                                                                                                    aTCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGa      >  2:597292/1‑143 (MQ=255)                                                                                                                                                      |                                                                                                                                                 AGTGATGACAAGTCCTTGAGATACGTTGCAGTTATAACCCTTAATGCTAGCGTTACCGTCCGCTATCGTCTATGTTCAAGTTGTCTTAATTGCCAGAATCTAACGGCTTTCGGCAATTACTCCAAAAGGGGGCGCTCTCTTTTATTGATCTTACGCATCCTGTATGATGCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAG  >  NC_000913_3_pae_tpiA/1263501‑1263794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.