New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA 1263650 =69 (1.190)24 (0.420) 23/272 2.4 26.9% intergenic (‑150/‑64) lolB/hemA lipoprotein localization factor/glutamyl tRNA reductase
?NC_000913_3_pae_tpiA = 1263818 63 (1.110)coding (105/1257 nt) hemA glutamyl tRNA reductase

GCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCTGGCTTTGCGATTATCACAATCTTAATGAAGAAGATCTGC  >  NC_000913_3_pae_tpiA/1263669‑1263966
                                                                                                                                                     |                                                                                                                                                    
gCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTg                                                                                                                                                      >  2:147054/1‑150 (MQ=255)
gCAAGCAGACTAACCCTATCAACGATGGTCTTATTTCCCCCAGACATGACCCTATCAGCACTCGGTATCAACCATAAAAAGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTg                                                                                                                                                      >  2:384060/1‑150 (MQ=255)
  aaGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGct                                                                                                                                                    >  1:217314‑M2/1‑148 (MQ=255)
     cAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttac                                                                                                                                                 >  2:604823‑M2/1‑145 (MQ=255)
       gACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgc                                                                                                                                               >  3:22878‑M2/1‑143 (MQ=255)
        aCTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCa                                                                                                                                              >  1:432399/1‑150 (MQ=255)
              ccTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGTCGGATAAGCTCGATCAGGCTCTTGACAGCCTGcttacgcatcctgt                                                                                                                                        >  2:297168‑M2/1‑136 (MQ=255)
               cTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgta                                                                                                                                       >  1:389766‑M2/1‑135 (MQ=255)
                 aTCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCATCCGATGGt                                                                                                                                     >  4:75976/1‑150 (MQ=255)
                  tCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTg                                                                                                                                    >  3:116500/1‑150 (MQ=255)
                   cAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGc                                                                                                                                   <  2:287877/150‑1 (MQ=255)
                          ggTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagca                                                                                                                            >  2:110152‑M2/1‑124 (MQ=255)
                           gTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGggcggc                                                                                                                           >  1:98279/1‑150 (MQ=255)
                              ttattTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatc                                                                                                                                            <  2:418835‑M2/130‑11 (MQ=255)
                              ttattTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatc                                                                                                                                            >  1:418835‑M2/1‑120 (MQ=255)
                                attTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCgtggt                                                                                                                      >  1:490722/1‑150 (MQ=255)
                                attTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCgtggt                                                                                                                      <  3:314321/150‑1 (MQ=255)
                                 tttCCCGCAGACATGACCCTTTTAGCACTCGTTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTCTATCGTTTTCGCCTGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagcagactaac                                                                                                                     >  3:11723‑M2/1‑117 (MQ=255)
                                    cccGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCgtggtg                                                                                                                     >  2:125449/1‑147 (MQ=255)
                                    cccGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCgtggtg                                                                                                                     <  1:125449/147‑1 (MQ=255)
                                      cGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTc                                                                                                                >  4:142092/1‑150 (MQ=255)
                                       gCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCg                                                                                                               >  1:386014/1‑150 (MQ=255)
                                       gCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCg                                                                                                               >  1:465081/1‑150 (MQ=255)
                                        cAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGa                                                                                                              <  2:106906/150‑1 (MQ=255)
                                           aCATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGt                                                                                                           <  1:109046/150‑1 (MQ=255)
                                             aTGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagcagactaaccctatcaacgtt                                                                                                         >  1:23391‑M2/1‑105 (MQ=255)
                                             aTGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagcagactaaccctatcaacgtt                                                                                                         >  1:99908‑M2/1‑105 (MQ=255)
                                                 cccTTTTAGCACTCGGTATCAACCATAAAGCGGCACCTGTAGCGCTGCTAGAACGTTGATCGGGTGCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAAcc                                                                                                     <  1:370252/150‑1 (MQ=255)
                                                  ccTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCg                                                                                                    >  1:85668/1‑150 (MQ=255)
                                                        aGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagcagcctaaccctgtcaacgttggtattatttc                                                                                              <  2:600461‑M2/150‑57 (MQ=255)
                                                        aGCACCCGGTATCTACCATAACACGGCACCTGTATCGCTGCGAGCACGTGTATCGTGTTCGTCGCATAAGCTCGAGCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagcagactaaccctatcaacgttggtattatttc                                                                                              >  2:579949‑M2/1‑94 (MQ=255)
                                                           aCTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagcagactaaccctatcaacgttggtattatttcccg                                                                                           >  2:305914‑M2/1‑91 (MQ=255)
                                                             tCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACttt                                                                                         <  1:453162/150‑1 (MQ=255)
                                                             tCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACttt                                                                                         <  1:453568/150‑1 (MQ=255)
                                                             tCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTANCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcaacctgtatgatggaagcgcacgaaccctagcaacggtggtagtattgcccgcc                                                                                         <  1:292206‑M2/150‑62 (MQ=255)
                                                                   tctaCCATAAAACGGCACCTGTATCGCTGCCAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTa                                                                                   <  1:403493/147‑1 (MQ=255)
                                                                        cATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGtt                                                                              >  2:52449/1‑150 (MQ=255)
                                                                        cATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGtt                                                                              >  1:101716/1‑150 (MQ=255)
                                                                         aTAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATAGTGCAGGGCGGCGTGGTGCCGTCGACCTGCAACCGCACTGCACTCCATCTTAgagatc                                                                             >  2:403493/1‑145 (MQ=255)
                                                                          tAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATg                                                                                                                                       <  2:20779/91‑1 (MQ=255)
                                                                          tAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATg                                                                                                                                       >  1:20779/1‑91 (MQ=255)
                                                                           aaaaCGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGaa                                                                           <  1:182199/150‑1 (MQ=255)
                                                                            aaaCGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAg                                                                                                                                             <  4:139222/83‑1 (MQ=255)
                                                                            aaaCGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAg                                                                                                                                             >  3:139222/1‑83 (MQ=255)
                                                                             aaCGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAaga                                                                         >  2:34677/1‑150 (MQ=255)
                                                                                ggCCCCTGTATCGCTGCGAGACCGTGTATCGTTTGCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCa                                                                      <  2:292206/150‑1 (MQ=255)
                                                                                ggCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCa                                                                      <  3:264735/150‑1 (MQ=255)
                                                                                 gCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAg                                                                     <  1:147054/150‑1 (MQ=255)
                                                                                   aCCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGTCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGa                                                                   <  1:363446/150‑1 (MQ=255)
                                                                                      tGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGCCaa                                                                >  1:234815/1‑150 (MQ=255)
                                                                                       gTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAAc                                                               <  1:34677/150‑1 (MQ=255)
                                                                                         aTCGCTGCGAGAACGTGTATCGTTTTCGCCTGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCATGGCTGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTGATCTTAGCGTTGAAGAGCAGGACAACCt                                                             <  2:281963/150‑1 (MQ=255)
                                                                                          tCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCgtg                                                                                                                        <  3:160056/90‑1 (MQ=255)
                                                                                          tCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCgtg                                                                                                                        >  4:160056/1‑90 (MQ=255)
                                                                                               gCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAaga                                                       <  1:239852/150‑1 (MQ=255)
                                                                                                 gagaACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagcagactaaccctatcaacgttggtattatttcccgcagacatgacccttttagcactcggtatcaaccataaa                                                     <  1:432945‑M2/150‑98 (MQ=255)
                                                                                                  agaACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGc                                                    <  4:197737/150‑1 (MQ=255)
                                                                                                   gaACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCg                                                   >  2:89380/1‑150 (MQ=255)
                                                                                                   gaACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCg                                                   >  4:89731/1‑150 (MQ=255)
                                                                                                       gtgtATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTaa                                               >  1:386531/1‑150 (MQ=255)
                                                                                                       gtgtATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTaa                                               >  2:162606/1‑150 (MQ=255)
                                                                                                        tgtATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAAt                                              >  4:235143/1‑150 (MQ=255)
                                                                                                          tATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagcagactaaccctatcaacgttggtattatttcccgcagacatgacccttttagcactcggtatcaaccataaaacggcacct                                            <  1:557375‑M2/150‑107 (MQ=255)
                                                                                                            tCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGc                                          >  2:240076/1‑150 (MQ=255)
                                                                                                            tCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAACCCGc                                          >  4:33448/1‑150 (MQ=255)
                                                                                                               ttttCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagcagactaaccctatcaacgttggtattatttcccgcagacatgacccttttagcactcggtatcaaccataaaacggcacctgtatc                                       <  3:191093‑M2/150‑112 (MQ=255)
                                                                                                                  tCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagcagactaaccctatcaacgttggtattatttcccgcagacatgacccttttagcactcggtatcaaccataaaacggcacctgtatcgct                                    <  1:291916‑M2/150‑115 (MQ=255)
                                                                                                                   cGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCTGGCttt                                   <  4:116500/150‑1 (MQ=255)
                                                                                                                    gCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagcagactaaccctatcaacgttggtattatttcccgcagacatgacccttttagcactcggtatcaaccataaaacggcacctgtatcgctgc                                  <  3:197737‑M2/150‑117 (MQ=255)
                                                                                                                    gCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCTGGCTTTg                                  <  2:386531/150‑1 (MQ=255)
                                                                                                                     ccGGATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagcagactaaccctatcaacgttggtattatttcccgcagacatgacccttttagcactcggtatcaaccataaaacggcacctgtatcgctgcg                                 <  3:104865‑M2/150‑118 (MQ=255)
                                                                                                                      cGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCTGGCTTTGCg                                >  1:452615/1‑150 (MQ=255)
                                                                                                                        gATAAGCTCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagcagactaaccctatcaacgttggtattatttcccgcagacatgacccttttagcactcggtatcaaccataaaacggcacctgtatcgctgcgaga                              <  3:190194‑M2/150‑121 (MQ=255)
                                                                                                                          tAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCTGGCTTTGCGATTa                            >  3:95485/1‑150 (MQ=255)
                                                                                                                              cTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCTGGCTTTGCGATTATcac                        >  1:330404/1‑150 (MQ=255)
                                                                                                                               tCGATCAGGCGCTTGACAGCCTGcttacgcatcctgtatgatgcaagcagactaaccctatcaacgttggtattatttcccgcagacatgacccttttagcactcggtatcaaccataaaacggcacctgtatcgctgcgagaacgtgta                       <  1:69222‑M2/150‑128 (MQ=255)
                                                                                                                                cGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCTGGCTTTGCGATTATCACaa                      <  2:432399/150‑1 (MQ=255)
                                                                                                                                    cAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCTGGCTTTGCGATTATCACAATCtt                  >  2:224510/1‑150 (MQ=255)
                                                                                                                                     aGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCTGGCTTTGCGATTATCACAATCTTa                 <  4:190194/150‑1 (MQ=255)
                                                                                                                                      ggCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCACGAGGCGTTAATCCGCTGGCTTTGCGATTATCACAATCTTaa                >  4:247050/1‑150 (MQ=255)
                                                                                                                                       gcgcTTGACAGCCTGcttacgcatcctgtatgatgcaagcagactaaccctatcaacgttggtattatttcccgcagacatgacccttttagcactcggtatcaaccataaaacggcacctgtat                                        >  2:308853‑M2/1‑15 (MQ=255)
                                                                                                                                       gcgcTTGACAGCCTGcttacgcatcctgtatgatgcaagcagactaaccctatcaacgttggtattatttcccgcagacatgacccttttagcactcggtatcaaccataaaacggcacctgtat                                        <  1:308853‑M2/125‑111 (MQ=255)
                                                                                                                                         gcTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCTGGCTTTGCGATTATCACAATCTTAATga             >  1:8962/1‑150 (MQ=255)
                                                                                                                                             gACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCTGGCTTTGCGATTATCACAATCTTaa                <  4:125037/143‑1 (MQ=255)
                                                                                                                                             gACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCTGGCTTTGCGATTATCACAATCTTaa                >  3:125037/1‑143 (MQ=255)
                                                                                                                                                aGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCTGGCTTTGCGATTATCACAATCTTAATGAAGAAGAt      >  4:372605/1‑150 (MQ=255)
                                                                                                                                                  ccTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTg                                                                             <  1:196155/77‑1 (MQ=255)
                                                                                                                                                  ccTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTg                                                                             >  2:196155/1‑77 (MQ=255)
                                                                                                                                                  ccTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCTGGCTTTGCGATTATCACAATCTTAATGAAGAAGATCt    <  2:101716/150‑1 (MQ=255)
                                                                                                                                                    tGCTTGCGCAGCCGATTGTGCAGGGCGGCGGGGGGCTTTCTACGGGCAACCGCACGGAACTTTATCTGAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCTGGCTTTGCGATTATCACAATCTTAATGAAGAAGATCTGc  <  1:340582/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
GCAAGCAGACTAACCCTATCAACGTTGGTATTATTTCCCGCAGACATGACCCTTTTAGCACTCGGTATCAACCATAAAACGGCACCTGTATCGCTGCGAGAACGTGTATCGTTTTCGCCGGATAAGCTCGATCAGGCGCTTGACAGCCTGCTTGCGCAGCCGATGGTGCAGGGCGGCGTGGTGCTGTCGACGTGCAACCGCACGGAACTTTATCTTAGCGTTGAAGAGCAGGACAACCTGCAAGAGGCGTTAATCCGCTGGCTTTGCGATTATCACAATCTTAATGAAGAAGATCTGC  >  NC_000913_3_pae_tpiA/1263669‑1263966

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.