New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	4385264 =	58 (0.880)	4 (0.070)	4/260	8.9	6.5%	intergenic (+7/‑45)	yjeM/yjeN	putative transporter/uncharacterized protein
	?	NC_000913_3_pae_tpiA	4385291 =	61 (1.010)					intergenic (+34/‑18)	yjeM/yjeN	putative transporter/uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCTGTGGTTGAAGCCGGAGACTGGGACAGCACATTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATT  >  NC_000913_3_pae_tpiA/4385120‑4385404                                                                                                                                                 |                                                                                                                                             ccTGTGGTTGAAGCCGGAGACTGGGACAGCACATTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCt                                                                                                                                          >  1:586123/1‑149 (MQ=255)   tgtgGTTGAAGCCGGAGACTGGGACAGCACATTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCtct                                                                                                                                        >  2:25099/1‑147 (MQ=255)       gTTGAAGCCGGAGAGTGGGACAGCCCATTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTc                                                                                                                                    >  1:956505/1‑149 (MQ=255)       gTTGAAGCCGGAGACTGGGACAGCACATTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTc                                                                                                                                    >  1:166413/1‑149 (MQ=255)         tGAAGCCGGAGACTGGGACAGCACATTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGTTCTCTGGCAGCAGTGAAGTCGAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTa                                                                                                                                  <  1:539821/149‑1 (MQ=255)               cGGAGACTGGGACAGCACATTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGAc                                                                                                                            >  1:1045081/1‑149 (MQ=255)                    aCTGGGACAGCACATTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAg                                                                                                                       <  2:586123/149‑1 (MQ=255)                     gtGGGAAAGCACATTGTGGATGATTGGCGGCCCTGGCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAgg                                                                                                                      <  2:55709/148‑1 (MQ=255)                     cTGGGACAGCACATTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAgg                                                                                                                      <  2:845186/149‑1 (MQ=255)                        ggACAGCACATTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCg                                                                                                                   >  1:743311/1‑149 (MQ=255)                        ggACAGCACATTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACCATAGGGCg                                                                                                                   >  2:314697/1‑149 (MQ=255)                           caccacaTTGTGGATGGTTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGTGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTaa                                                                                                                <  2:202528/146‑1 (MQ=255)                             gCACATTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGa                                                                                                                             <  2:1091012/134‑1 (MQ=255)                             gCACATTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGa                                                                                                                             >  1:1091012/1‑134 (MQ=255)                               acaTTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGTGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGAc                                                                                                            >  2:222877/1‑149 (MQ=255)                                     tgGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGaaa                                                                                                      >  1:291251/1‑149 (MQ=255)                                           gttGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTAGTGCAGCAGAGTGGCAAAAAAGCCGTAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTAt                                                                                                <  2:571421/148‑1 (MQ=255)                                               gtggtcttGTTTTTTTTTCGCTGTTAGTGATTGCGTTTTTCCAGAAGTATTGCAGCAGAGTGGCAAAAATTTCGCAGTGGGCGGTTGAATAACGTGGTTCTCTATCGTTTACCTGACGATAGGGCGTAAAGTCATGAAATGTTATGGAt                                                                                            <  2:1079551/142‑1 (MQ=255)                                               gcggcCCTGTCTTCTTCTCGCTGTTAGGGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGAt                                                                                            <  2:801782/149‑1 (MQ=255)                                                  gcCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGac                                                                                         >  2:761799/1‑149 (MQ=255)                                                    ccTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGacac                                                                                       <  2:815813/149‑1 (MQ=255)                                                    ccTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGacac                                                                                       >  1:123990/1‑149 (MQ=255)                                                       gTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAg                                                                                    >  1:453457/1‑149 (MQ=255)                                                           tcttctTGGTGTTAGCGATGGCCATTTTCCAGAAATATGGCAGCAGAGTGGCAAAAAATCCCCAGTGGGCGGTGGAATAAACCGCTGCCCTATCGGCTACCTGGCGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCgg                                                                                <  1:960646/149‑1 (MQ=255)                                                           tctcgtcGCTGTTCGCGATGGCGATTTACCAGAAATATTGGAGAAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGGTGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCgg                                                                                <  2:267458/144‑1 (MQ=255)                                                             ttctCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGa                                                                              <  2:810082/149‑1 (MQ=255)                                                             tgctggCTGTTAGCTATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCTGTGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGa                                                                              <  2:806626/144‑1 (MQ=255)                                                               ctcGCTGTTAGCGATGGCGATCTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAAt                                                                                                     >  1:401557/1‑124 (MQ=255)                                                               ctcGCTGTTAGCGATGGCGATCTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAAt                                                                                                     <  2:401557/124‑1 (MQ=255)                                                                tcGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGAccc                                                                           <  2:743311/149‑1 (MQ=255)                                                                         gtgATGGCGGTTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAAc                                                                  <  2:104953/147‑1 (MQ=255)                                                                             tGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGaa                                                              >  1:131936/1‑149 (MQ=255)                                                                              ggCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAg                                                             >  1:160895/1‑149 (MQ=255)                                                                                 gATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGacac                                                                                       >  2:219294/1‑120 (MQ=255)                                                                                 gATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGacac                                                                                       <  1:219294/120‑1 (MQ=255)                                                                                 gATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATg                                                          >  1:1025464/1‑149 (MQ=255)                                                                                       ccAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCa                                                    >  1:408639/1‑149 (MQ=255)                                                                                        tacgaCTATAGCAGGAGAGCTGCAAAAAAGCCGCAGGGGGCGGGGGAATAACCCGATTCCCTATTGTCTACCTGACGATAGGGCGTAAAGAGAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAg                                                   <  2:887950/145‑1 (MQ=255)                                                                                         agcaCTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTCGAATAACCCGATGCCATATCGTCTCCCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAgg                                                  <  1:706457/146‑1 (MQ=255)                                                                                         aGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACGGGAAATGTTATGGAGGACACCAGCCGGGACCCGGCAATAACCGAAGATGAATTCAgg                                                  >  2:191168/1‑149 (MQ=255)                                                                                         aGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAgg                                                  <  2:160895/149‑1 (MQ=255)                                                                                         aGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCATCTACGGTACGATAGGGCGTAAAGACAGGACTTGTTATCGATGACACCAGCCGGGACCCGGCACTAACCGAAGATGAAAGCAgg                                                  >  2:63019/1‑149 (MQ=255)                                                                                                      cagAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAAtttt                                     <  2:291251/149‑1 (MQ=255)                                                                                                        gagTGGCAAAAAATCCCCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCt                                   >  1:965469/1‑149 (MQ=255)                                                                                                           tGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGAGCTGCACTTTTCTGcc                                >  2:644691/1‑149 (MQ=255)                                                                                                           tGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAAACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAACAACCGCAGACCAAATCAGGGCGCTCCAAtttcaccct                                >  2:1060543/1‑143 (MQ=255)                                                                                                            ggCAAAAAATCCGGAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCg                               <  2:580272/149‑1 (MQ=255)                                                                                                             gCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGCAGATGAAATCAGGGCGATGCAATTTTCTGCCgt                              >  2:215636/1‑148 (MQ=255)                                                                                                               aaaaaaTCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGAGCGCTGCAATTTTCTGCCgggg                            >  1:382483/1‑149 (MQ=255)                                                                                                                           gTGGGCGGTGGAATAACCCGATGCCCCATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGaaa                <  1:13776/149‑1 (MQ=255)                                                                                                                                    ggAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGa       <  1:391464/149‑1 (MQ=255)                                                                                                                                    ggAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGa       <  1:222877/149‑1 (MQ=255)                                                                                                                                      aaTAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGAc      >  1:964844/1‑148 (MQ=255)                                                                                                                                      aaTAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGAc      <  2:964844/148‑1 (MQ=255)                                                                                                                                      aaTAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACg     >  1:76678/1‑149 (MQ=255)                                                                                                                                       aTAACCCGATGCCCCATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGa    <  1:100936/149‑1 (MQ=255)                                                                                                                                         aaCCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGGCGAtt  >  1:184912/1‑149 (MQ=255)                                                                                                                                         aaCCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGAtt  <  1:39922/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                             CCTGTGGTTGAAGCCGGAGACTGGGACAGCACATTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATT  >  NC_000913_3_pae_tpiA/4385120‑4385404

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.