New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 4341711	44 (1.130)	4 (0.120)	4/250	4.8	9.4%	intergenic (‑167/‑116)	melR/melA	melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding
	?	NC_000913_3_pae_tpiA	= 4341731	39 (1.150)					intergenic (‑187/‑96)	melR/melA	melibiose operon transcriptional regulator; autoregulator/alpha‑galactosidase, NAD(P)‑binding
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAATATCAGAATTATGGCAGGAGTGAGGGAGGATGACTGCGAGTGGGAGCACGGTTTTCACCCTCTTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGCATGATGTCTGCACCCAAAATTACATTTATCGGC  >  NC_000913_3_pae_tpiA/4341563‑4341859                                                                                                                                                     |                                                                                                                                                     gAATATCAGAATTATGGCAGGAGTGAGGGAGGATGACTGCGAGTGGGAGCACGGTTTTCACCCTCTTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCCGAt                                                                                                                                                      >  1:295092/1‑149 (MQ=255)     atCAGAATTATGGCAGGAGTGAGGGAGGATGACTGCGAGTGGGAGCACGGTTTTCACCCTCTTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTAc                                                                                                                                                  >  1:583115/1‑149 (MQ=255)                   aGGGGTGAGGGAGGGTGACTGCGACTGTGATTACGTTTTGCACCCTTTTTCCTGATGGGCGAGGGGACTCTTCGAGTATCAGGAGGTCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATACACTCAGATTTACTGCTGTTTCATGCa                                                                                                                                    <  2:306667/149‑1 (MQ=255)                           gggaggATGACTGCGAGTGGGAGCACGGTTTTCACCCTCTTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGCAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGa                                                                                                                            >  1:670238/1‑149 (MQ=255)                              aggaTGACTGCGAGTGGGAGCACGGTTTTCACCCTCTTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGt                                                                                                                          >  2:58288/1‑148 (MQ=255)                              aggaTGACTGCGAGTGGGAGCACGGTTTTCACCCTCTTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGt                                                                                                                          <  1:58288/148‑1 (MQ=255)                                  tGACTGCGAGTGGGAGCACGGTTTTCACCCTCTTCCCAGAGGGGCGAGGGGACTTTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATg                                                                                                                     <  1:265476/149‑1 (MQ=255)                                   gACTGCGAGTGGGAGCAAGGTTTTCACCCTCTTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATgg                                                                                                                    <  1:128600/149‑1 (MQ=255)                                     cTGCGAGTGGGAGCACGGTTTTCACCCTCTTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTGACGCAGGATCTGAGTTTATGGGa                                                                                                                  >  1:231405/1‑149 (MQ=255)                                             gcgAGCACGGTTTTCACCCTCTTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCaa                                                                                                          <  2:294733/147‑1 (MQ=255)                                                          tCACCCTCTTCCCAGAGGGGCGAGGGGATTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATTTGAGGTTATGGGAATGCTCAACCTGGAAGCCGGa                                                                                             <  2:214473/149‑1 (MQ=255)                                                           cccccTCTTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAg                                                                                            <  2:390871/147‑1 (MQ=255)                                                           cacaCTCTTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCGGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGACTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAg                                                                                            <  1:402288/149‑1 (MQ=255)                                                              ccTCTTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCATATTTACTGCTGCTTCACGCAGGATCTGAGtt                                                                                                                         <  1:388712/117‑1 (MQ=255)                                                              ccTCTTCCCAGAGGGGCGAGCGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCATATTTACTGCTGCTTCACGCAGGATCTGAGtt                                                                                                                         >  2:388712/1‑117 (MQ=255)                                                                   tCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTg                                                                                    >  1:345868/1‑149 (MQ=255)                                                                   tCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTg                                                                                    <  2:497084/149‑1 (MQ=255)                                                                    cccAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGc                                                                                   <  1:437575/149‑1 (MQ=255)                                                                               gAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTAATGCGGTGACGGAGTTTATGGGAATGCTCAACCTGGAAGCCGGGGGCTTTCTGCAGATTCGCCTg                                                                        >  1:159746/1‑149 (MQ=255)                                                                                   ggACTCTCCGAGTATCATGAGGCCGAAATCTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCat                                                                    <  2:620007/149‑1 (MQ=255)                                                                                    gACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTGTTCTGCAGATTCGccgtccagt                                                                   >  1:282221/1‑142 (MQ=255)                                                                                       tctcCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCatgatg                                                                >  1:508234/1‑149 (MQ=255)                                                                                         tcCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGtt                                                                                         <  1:261569/122‑1 (MQ=255)                                                                                         tcCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGtt                                                                                         >  2:261569/1‑122 (MQ=255)                                                                                                 tCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTca                                                      >  2:639178/1‑149 (MQ=255)                                                                                                  cATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTcaa                                                     <  1:243919/149‑1 (MQ=255)                                                                                                    tGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGTTCTTAGTTTATGGGAATGCTAAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTcaagc                                                   >  2:453462/1‑149 (MQ=255)                                                                                                    tGAGGCCGAAAACTATGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTcaagc                                                   <  1:623331/149‑1 (MQ=255)                                                                                                         ccGAAAACTCTGCTTTTAAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCTCCTGCCATGATGAAGTTATTCAAGCAAGcc                                              <  1:98990/149‑1 (MQ=255)                                                                                                             agaCTCTGCTTTTGCGGTAATCTATTCCCATAAACTCATCTTTACTGCTGCTTCACGTAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCTGGTGGTTTTCTGGAGATTCGCCTGCCATGTTGAAGTTATTCAAGCAAGCCAGga                                          <  2:216666/147‑1 (MQ=255)                                                                                                             aaaCTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGga                                          >  1:152253/1‑149 (MQ=255)                                                                                                                      ttttCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCAAGGAGAACTgaaa                                 >  1:61851/1‑146 (MQ=255)                                                                                                                           aGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGCATGATGt                            <  2:583115/149‑1 (MQ=255)                                                                                                                           aGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGCATGATGt                            <  2:670238/149‑1 (MQ=255)                                                                                                                             gTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGCATGATGTCt                          <  2:508234/149‑1 (MQ=255)                                                                                                                                 tttATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGCATGATGTCTGCAc                      <  1:639178/149‑1 (MQ=255)                                                                                                                                     ttCCCATAAACTCAGATTTACTGCTGCTTCAAAAAAGATGAGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGCATGATGTCTGCACCCaa                  >  1:674877/1‑149 (MQ=255)                                                                                                                                       gctaTAAACTCAGATTTATTGGTGCTTCACGCAAGATCTGGTTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGCATGATGTCTGCACCCaaaa                <  2:282221/146‑1 (MQ=255)                                                                                                                                        ccATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTATTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGACTGTTGTCTACACCCAAAAt               >  2:611981/1‑149 (MQ=255)                                                                                                                                        ccATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGACAGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGCATGATGTCTCCACCCaaact               >  2:44890/1‑147 (MQ=255)                                                                                                                                         cATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCTAGGAGATCTGCATGATGTCTGCACCCAAAAtt              >  1:200870/1‑149 (MQ=255)                                                                                                                                              aCTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCt                                                                                                             >  2:547503/1‑49 (MQ=255)                                                                                                                                              aCTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCt                                                                                                             <  1:547503/49‑1 (MQ=255)                                                                                                                                                tCAGATTTACTGCTGCTTCACGCCGGATCTGAGTTTACGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAACCAGGAGACCTGCACGATGTCTGCACCCAAAATTAAATTTa       >  2:80184/1‑149 (MQ=255)                                                                                                                                                     tttACTGCTGCTTCACGCAGGATCGGAGTTCATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTGAAGCAAGCCCGGAGATCTGCATGCTGGATTCACACAAAATCACTTTTAACgac  >  2:644807/1‑147 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GAATATCAGAATTATGGCAGGAGTGAGGGAGGATGACTGCGAGTGGGAGCACGGTTTTCACCCTCTTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGCATGATGTCTGCACCCAAAATTACATTTATCGGC  >  NC_000913_3_pae_tpiA/4341563‑4341859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.