mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_tpiA | 4,295,976 | 0 | C | T | 34.9% | 121.0 / 100.1 | 106 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 217 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 1207790 = | 12 (0.160) | 26 (0.390) | 22/240 | 3.9 | 79.3% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | 1209619 = | 3 (0.040) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_pae_tpiA | 4040719 = | 54 (0.710) | 13 (0.180) | 13/254 | 7.0 | 21.4% | intergenic (+83/+187) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913_3_pae_tpiA | 4040742 = | 45 (0.630) | intergenic (+106/+164) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913_3_pae_tpiA | 4040733 = | 52 (0.690) | 12 (0.170) | 12/254 | 7.4 | 20.9% | intergenic (+97/+173) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913_3_pae_tpiA | 4171764 = | 42 (0.590) | intergenic (+92/‑209) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3423340 | 67 (0.880) | 12 (0.170) | 12/254 | 7.4 | 18.2% | intergenic (+146/+83) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| ? | NC_000913_3_pae_tpiA | 4040742 = | 45 (0.630) | intergenic (+106/+164) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B | |||||
| * | ? | NC_000913_3_pae_tpiA | = 781222 | 57 (0.750) | 17 (0.230) +ATGT |
12/264 | 7.7 | 23.5% | noncoding (76/76 nt) | lysY | tRNA‑Lys |
| ? | NC_000913_3_pae_tpiA | = 781839 | NA (NA) | intergenic (+187/‑246) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A | |||||
| * | ? | NC_000913_3_pae_tpiA | = 781222 | 57 (0.750) | 17 (0.230) +ATGT |
12/264 | 7.7 | 19.7% | noncoding (76/76 nt) | lysY | tRNA‑Lys |
| ? | NC_000913_3_pae_tpiA | = 781683 | 86 (1.130) | intergenic (+31/‑402) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A | |||||
| * | ? | NC_000913_3_pae_tpiA | = 781222 | 57 (0.750) | 17 (0.230) +AT |
12/268 | 7.8 | 17.4% | noncoding (76/76 nt) | lysY | tRNA‑Lys |
| ? | NC_000913_3_pae_tpiA | = 2521361 | 107 (1.410) | intergenic (+33/+232) | lysV/xapR | tRNA‑Lys/transcriptional activator of xapAB | |||||
| * | ? | NC_000913_3_pae_tpiA | = 4114451 | 57 (0.750) | 12 (0.170) | 10/254 | 8.3 | 18.4% | intergenic (‑63/+34) | fpr/glpX | ferredoxin‑NADP reductase; flavodoxin reductase/fructose 1,6‑bisphosphatase II |
| ? | NC_000913_3_pae_tpiA | = 4114455 | 53 (0.750) | intergenic (‑67/+30) | fpr/glpX | ferredoxin‑NADP reductase; flavodoxin reductase/fructose 1,6‑bisphosphatase II | |||||
| * | ? | NC_000913_3_pae_tpiA | 1570598 = | 93 (1.230) | 11 (0.160) | 9/248 | 8.5 | 11.7% | intergenic (‑109/+47) | gadC/gadB | glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent |
| ? | NC_000913_3_pae_tpiA | 1570626 = | 81 (1.170) | intergenic (‑137/+19) | gadC/gadB | glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent | |||||
| * | ? | NC_000913_3_pae_tpiA | = 3852844 | 61 (0.800) | 11 (0.160) | 9/250 | 8.6 | 16.7% | intergenic (‑60/+46) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide |
| ? | NC_000913_3_pae_tpiA | = 3852855 | 54 (0.770) | intergenic (‑71/+35) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide | |||||