New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	3437896 =	28 (1.130)	3 (0.130)	3/260	3.0	9.9%	intergenic (+2/‑128)	trkA/mscL	NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance
	?	NC_000913_3_pae_tpiA	3437924 =	29 (1.280)					intergenic (+30/‑100)	trkA/mscL	NAD‑binding component of TrK potassium transporter/mechanosensitive channel protein, high conductance
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGTAATTATGTTCCTCACAGATAAAAAGTTTATTACCGACGTCGAAAGACTCTTCCAGCCAAGCCCTTTCTTCTTGTAATTAATAAGGCGTCTAATGACGCCTTATTATTTCCCTTTGATTATCAAGGATTAATTAAATTCATTCCTGGCAGGAAAATGGCTTAACATTTGTTAGACTTATGGTTGTCGGCTTCATAGGGAGAATAACATGAGCATTATTAAA  >  NC_000913_3_pae_tpiA/3437766‑3438038                                                                                                                                   |                                                                                                                                               aaCGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGTAATTATGTTCCTCACAGATAAAAAGTTTATTACCGACGTCGAAAGACTCTTCCAGCCAAGCCCTTTCTTCTTGTAATTAATAAGGCGTCTAATGAc                                                                                                                              <  2:283183/149‑1 (MQ=255)           tgatTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGTAATTATGTTCCTCACAGATAAAAAGTTTATTACCGACGTCGAAAGACTCTTCCAGCCAAGCCCTTTCTTCTTGTAATTAATAAGGCGTCTAATGACGCCTtattat                                                                                                                    >  2:220568/1‑149 (MQ=255)           tgatTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGTAATTATGTTCCTCACAGATAAAAAGTTTATTACCGACGTCGAAAGACTCTTCCAGCCAAGCCCTTTCTTCTTGTAATTAATAAGGCGTCTAATGACGCCTtattat                                                                                                                    >  2:78470/1‑149 (MQ=255)               tGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGTAATTATGTTCCTCACAGATAAAAAGTTTATTACCGACGTCGAAAGATTCTTCCAGCCAAGCCCTTTCTTCTTGTAATTAATAAGGCGTCTAATGACGCCTTATTATTTcc                                                                                                                <  1:174850/149‑1 (MQ=255)                  cAATGACAATCTGCGCATTGAGCAAGGCGATCACGTAATTATGTTCCTCACAGATAACACGTTTATTACCGACGTCGAAAGACTCTTCCAGCCAAGCCCTTTCTTCTTGTAATTAATAAGGCGTCTAATGACGCCTTATTATTTCCCtt                                                                                                             >  1:353057/1‑149 (MQ=255)                    aTGACAATCTGCGCATTGAGCAAGGCGATCACGTAATTATGTTCCTCACAGATAAAAAGTTTATTACCGACGTCGAAAGACTCTTCCAGCCAAGCCCTTTCTTCTTGTAATTAATAAGGCGTCTAATGACGCCTTATTATTTCGCTTTg                                                                                                           >  2:252214/1‑149 (MQ=255)                               cgcATTGAGCAAGGCGATCACGTAATTATGTTCCTCACAGATAAAAAGTTTATTACCGACGTCGAAAGACTCTTCCAGCCAAGCCCCTTCTTCTTGTAATTAATAAGGCGTCTAATGACGCCTTATTATTTCCCTTTGATTATCAAGGa                                                                                                <  2:229355/149‑1 (MQ=255)                                        cacggCGATCACGTAATTATGTTCCTCACAGATAAAAAGTTTATTACCGACGTCGAAAGACTCTTCCAGCCAAGCCCTTTCTTCTTGTAATTAATAAGGCGTCTAATGACGCCTTATTATTTCCCTTTGATTATCAAGGATTAATTaaa                                                                                       <  1:120650/146‑1 (MQ=255)                                        cAAGGCGATCACGTAATTATGTTCCTCACAGATAAAAAGTTTATTACCGACGTCGAAAGTCTCTTCCAGCCAAGCCCTTTCTTCTTGTAATTAATAAGGCGTCTAATGACGCCTTATTATTTCCCTTTGATTATCAAGGATTAATTaaa                                                                                       <  2:227366/149‑1 (MQ=255)                                         aaGGCGATCACGTAATTATGTTCCTCACAGATAAAAAGTTTATTACCGACGTCGAAAGACTCTTCCAGCCAAGCCCTTTCTTCTTGTAATTAATAGTGCGGCTGATAACGCCTTATTTTTTCCCTTTGGTTAGCTAGGatgaagtttat                                                                                      >  1:195434/1‑143 (MQ=255)                                              gATCACGTAATTATGTTCCTCACAGATAAAAAGTTTATTACCGACGTCGAAAGACTCTTCCAGCCAAGCCCTTTCTTCTTGTAATTAATAACGCGTCTAATAACCCCTTATTATTTCCCTTTGATTATACACGATTAATTAAattcctt                                                                                 >  2:129642/1‑149 (MQ=255)                                                 cACGTAATTATGTTCCTCACAGATAAATAGTTAAATTCTGTTAACGAAAGGCTCTTCCAGCCAAGCCCTTTCTTCTTGTAATTAATAAGGCGTCTAATGACGCCTTATTATTTCCCTTTGATTATCAAGGATTAATTAAATTCATTCCt                                                                              <  2:195434/149‑1 (MQ=255)                                                  aCGTAATTATGTTCCTCACAGATAAAAAGTTTATTACCGCCGTCGAAAGACTCTTCCTGCCAAGCCCTTTCTTCTTGTAATTAATAAGTCGTCTAATGACGCCTTATTATTTCCCTTTGATTATCAAGGCTTAATTAAATTCATTCCTg                                                                             >  1:190308/1‑149 (MQ=255)                                                    gTAATTATGTTCCTCACAGATAAAAAGTTTATTACCGACGTCGAAAGACTCTTCCAGCCAAGCCCTTTCTTCTTGTAATTAATAAGGCGTCTAATGACGCCTTATTATTTCCCTTTGATTATCAAGGATTAATTAAATTCATTCCTGGc                                                                           >  2:254097/1‑149 (MQ=255)                                                             ttCCTCACAGATAAAAAGTTTATTACCGACGTCGAAAGACTCTTCCAGCCAAGGCCTTTCTTCTTGTAATTAATAAGGAGTCTAATGACGCCTTATTATTTCCATTTGATTATCAAGGATTAATTAAATTCATTCCTGCCAGGGAAATg                                                                  >  2:401557/1‑149 (MQ=255)                                                                 tCACAGATAAAAAGTTTATTACCGACGTCGAAAGACTCTTCCAGCCAAGCCCTTTCTTCTTGTAATTAATAAGGCGTCTAATGACGCCTTATTATTTCCCTTTGATTATCAAGGATTAATTAAATTCATTCCTGGCAGGAAAATGGCtt                                                              <  1:283047/149‑1 (MQ=255)                                                                   acaGATAAAAGGTTTATTCCCGACGTCGAAAGACTATTCCAGCCAAGCCCTTTCTTCTTGTAATTAATAAGGCGTCTAATGACGCATTATTATTTCCCTTTGATTATCAAGGATTAATTAAATTCATTCCTGGCAGGAAAATGGCTTaa                                                            <  2:149112/149‑1 (MQ=255)                                                                        tAAAAAGTTTATTAACGACGTTGAAAGACTCTTCCAGCCAAGCCCTTTCTTCTTGTAATTAATAAGGCGTCTAATGACGCCTTATTATTTCCCTTTGATTATCAAGGATTAATTAAATTCATTCCTGGCAGGAAAATGGCTTAACAttt                                                       <  2:415829/149‑1 (MQ=255)                                                                          aaaaGTTTATTACCGACGTCGAAAGACTCTTCCAGCCAAGCCCTTTCTTCTTGTAATTAATAAGGCGTCTAATGACGCCTTATTATTTCCCTTTGATTATCAAGGATTAATTAAATTCATTCCTGGCAGGAAAATGGCTTAACATTTGt                                                     <  1:16769/149‑1 (MQ=255)                                                                              gTTTATTACAGATGGTGAAAGACTCTTCCAGTGAATCACTTTCTTCTTGGAATTAACAAGGCGTTTAATGATGCCTTATTACTTCCCTTTGATTATCAAGGATTAATTAAATTCATTCCTGGCAGGAAAATGGCTTAACATTTGTTAGa                                                 <  2:99374/149‑1 (MQ=255)                                                                                      ccGACGTCGAAAGACTCTTCCAGCCAAACCCTTTCTTCTTGTAATTAATAAGGCGTCTAATGACTCCTTATTATTTCCCTTTGATTATCAAGGATTAATTAAATTCATTCCTGCCAGGAAAATGGCTTAACATTTGTTATACTTagcgt                                         >  2:43191/1‑145 (MQ=255)                                                                                                   aCTCTTCTAGCCAAGTTCTTTCTTCTTGTAATTAATAAGGCGTCTCATGCATCCCAGTTATTTCCCTTTGATTATCAAGGATTAATTAAATTCATTCCTGGCAGGAAAATGGCTTAACATTTGTTAGACTTATGGTTGTCGGCTTCATa                            <  1:395644/149‑1 (MQ=255)                                                                                                               aaGCCCTTTCTTCTTGTAATTAATAAGGCGTCGAAAGACGCCATATTATTTCCCTTTGATTATCAAGGATTAATTAAAATCATTCCTGGCAGGAAAATGGCTTAACATTTGTTAGACTTATGGTTGTCGGCTTCGTAGGGAGAAAAACa                >  2:399045/1‑149 (MQ=255)                                                                                                               aaGCCCTTTCTGCTTGTAATTAATAAGGCGTCTGATGACGCCGTATTATTTCCCTTTGATTATCAAGGATTAATTAAATTCATTCCTGGCAGGAAAATGGCTTAACATTTGTTAGACTTATGGTTGTCGGCTTCATAGGGAGAATAACa                <  1:78470/149‑1 (MQ=255)                                                                                                                   ccTTTCTTCTTGTAATTAATAAGGCGTCTAATGACGCCTTATTATTTCCCTTTGATTATCAAGGATTAATTAAATTCATTCCTGGCAGGAAAATGGCTTAACATTTGTTAGACTTATGGTTGTCGGCTTCATAGGGAGAATAACATGAg            <  1:254097/149‑1 (MQ=255)                                                                                                                     tttCTTCTTGTAATTAATAAGGCGTCTAATGACGCCTTATTATTTCCCTTTGATTATCAAGGATTAATTAAATTCATTCCTGGCAGGAAAATGGCTTAACATTTGTTAGACTTATGGTTGTCGGCTTCATAGGGAGAATACAATGGGCa          >  1:347883/1‑149 (MQ=255)                                                                                                                     tttCTTCTTGTAATTAATAAGGCGTCTAATGACGCCTTATTATTTCCCTTTGATTATCAAGAATTAATTAAATTCATTCCTGGCAGGAAAATGGCTTAACATTTGTTAGACTTATGGTTGTCGGCTTCATAGGGAGAATAAAATGAGCa          >  2:279505/1‑149 (MQ=255)                                                                                                                             tGTAATTAATAAGGCGTCTAATGACGCCTTATTATTTCCCTTTGATTATCAAGGATTAATTAAATTCATTCCTGGCAGGAAAATGGCTTAACATTTGTTAGACTTATGGTTGTCGGCTTCATAGGGAGAATAACATGAGCATTATTaaa  <  1:363051/149‑1 (MQ=255)                                                                                                                                   |                                                                                                                                               AACGACGTGATGATTGCCAATGACAATCTGCGCATTGAGCAAGGCGATCACGTAATTATGTTCCTCACAGATAAAAAGTTTATTACCGACGTCGAAAGACTCTTCCAGCCAAGCCCTTTCTTCTTGTAATTAATAAGGCGTCTAATGACGCCTTATTATTTCCCTTTGATTATCAAGGATTAATTAAATTCATTCCTGGCAGGAAAATGGCTTAACATTTGTTAGACTTATGGTTGTCGGCTTCATAGGGAGAATAACATGAGCATTATTAAA  >  NC_000913_3_pae_tpiA/3437766‑3438038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.