New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	1477604 =	27 (0.740)	4 (0.120)	4/264	4.5	13.2%	intergenic (+154/‑17)	ydbD/ynbA	PF10971 family putative periplasmic methylglyoxal resistance protein/inner membrane protein
	?	NC_000913_3_pae_tpiA	1477623 =	27 (0.790)					coding (3/606 nt)	ynbA	inner membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATGTTTTTTAACTATCTGATTAATTGGGGATAATCATTCCTGACAGTGAGTCCCCAATACCTTGATATATTCTGAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAGGCCGACGATGTTTTGGCTTTATAAGCACCACGTTACAGCGAATCACATCACTCTTGCTG  >  NC_000913_3_pae_tpiA/1477462‑1477723                                                                                                                                               |                                                                                                                        aTGTTTTTTAACTATCTGATTAATTGGGGATAATCATTCCTGACAGTGAGTCCCCAATACCTTGATATATTCTGAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCa                                                                                                                   >  1:131954/1‑149 (MQ=255)              aTCTGATTAATTGGGGATAATCATTCCTGACAGTGAGTCCCCAATACCTTGATATATTCTGAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATg                                                                                                      >  1:64372/1‑149 (MQ=255)               tCTGATTAATTGGGGATAATCATTCCTGACAGTGAGTCCCCAATACCTTGATATATTCTGAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGa                                                                                                     >  1:360131/1‑149 (MQ=255)                 tGATTAATTGGGGATAATCATTCCTCTCAGTGAGACCCTCTTCTATAAAAATCTTCTGAATTTTTAATGAAACGCCCTGGTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACg                                                                                                   <  1:623227/149‑1 (MQ=255)                  gATTAATTGGGGATAATCATTCCTGACAGTGAGTCCCCAATACCTTGATATATTCTGAATTTTTAATGAAACGGCGAATTACGATATATCCGTCAGACACCTCTAGTCAACTTCACGCACACCGAATTATCAAGGATTGATAATGACGc                                                                                                  >  1:147611/1‑149 (MQ=255)                           gggATAATCATTCCTGACAGTGAGTCCCCAATACCTTGATATATTCTGAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGa                                                                                         >  1:582032/1‑149 (MQ=255)                             gATAATCATTCCTGACAGTGAGTCCCCAATACCTTGATATATTCTGAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGAtt                                                                                                             <  2:280146/127‑1 (MQ=255)                             gATAATCATTCCTGACAGTGAGTCCCCAATACCTTGATATATTCTGAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGAtt                                                                                                             >  1:280146/1‑127 (MQ=255)                                             aGTGAGTCCCCAATACCTTGATATATTCTGAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGAAAAAACCGCTCTTTCAGt                                                                       >  1:124139/1‑149 (MQ=255)                                                 aGTCCCCAATACCTTGATATATTCTGAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATCACGCCCTACCAGCTAAAACCACACTTTCAGCCGCt                                                                   >  2:147974/1‑149 (MQ=255)                                                  gTCCCCAATACCTTGATATATTCTGAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTg                                                                  <  2:135992/149‑1 (MQ=255)                                                   tCCCCAATACCTTGATATATTCTGAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCGAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGt                                                                 >  2:577839/1‑149 (MQ=255)                                                      ccAATACCTTGATATATTCTGAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTaa                                                              <  1:322617/149‑1 (MQ=255)                                                       acaTACCTGGATATATTCTTAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAg                                                             <  1:269987/147‑1 (MQ=255)                                                                       tCTGAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAGGCCGACGATGTTTTgg                                             <  2:131954/149‑1 (MQ=255)                                                                         tGAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAAGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGAATTGATAATGACGCTCTACCAGATAAAACAGCTCTTTCAGTCGCTGTTAAAGACGACGATGTTTTGGCt                                           >  1:293914/1‑149 (MQ=255)                                                                            aTTTTTTATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGTATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAGGCCGACGATGTTTTGGCTTta                                        <  1:10015/149‑1 (MQ=255)                                                                            aTTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAGGCCGACGATGTTTTGGCTTta                                        <  1:336957/149‑1 (MQ=255)                                                                            aTTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAGGCCGACGATGTTTTGGCTTta                                        >  1:399158/1‑149 (MQ=255)                                                                                                     atagCTCCGTTAGGGAAATTGATGCACGAAAACGCAAACCGAATTATCAAGGATTGAGAATGACGCTTTACCAGATAAAACCGCTCTTACAGTCGCTGTTAAGGCCGACGATGTTTTGGCTTTATAAGCACCACGTTACAGCGAatcac               <  2:530082/149‑1 (MQ=255)                                                                                                        tctcCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAGGCCGACGATGTTTTGGCTTTATAAGCACCACGTTACAGCGAatcacatc            >  1:420383/1‑149 (MQ=255)                                                                                                          tcCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAGGCCGACGATGTTTTGGCTTTATAAGCACCACGTTACAGCGAatcacatcac          >  1:636559/1‑149 (MQ=255)                                                                                                          tcCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAGGACGACGATGTTTTGGCTTTATAAGCACAACGTTACAGCAAatcacatcac          >  2:16615/1‑149 (MQ=255)                                                                                                            cGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATACCACCACATCGCAAAATGAACCAGCGCCAGCAGGTGCTGTTAAAGCGGACAGCGCGTTTGCGTTATTAGCACCACATTACAGCGAATCACATCActc        >  1:628557/1‑149 (MQ=255)                                                                                                                aGGGGAATTGATGCACCATATCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGAGAAAACCGCTCTTTCAGTCGCTGTTAAGGCCGCAGCTCTTTTGGCTTTATAAGCACCACGTTACAGCTAATCACATCACTCTtgc    <  1:316757/149‑1 (MQ=255)                                                                                                                  gggAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAGGCCGACGATGTTTTGGCTTTATAAGCACCACGTTACAGCGAATCACATCACTCTtgctg  >  1:503294/1‑149 (MQ=255)                                                                                                                  gggAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAGGCCGACGATGTTTTGGCTTTATAAGCACCACGTTACAGCGAATCACATAACTCTtcctg  >  1:304912/1‑149 (MQ=255)                                                                                                                                             tcaTTATCAATCCTTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAGGCCGACGATGTTTTGGCTTTATAAGCACCACGTTACAGCGAATCACATCACTCTtg     <  1:296813/117‑1 (MQ=255)                                                                                                                                               |                                                                                                                        ATGTTTTTTAACTATCTGATTAATTGGGGATAATCATTCCTGACAGTGAGTCCCCAATACCTTGATATATTCTGAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAGGCCGACGATGTTTTGGCTTTATAAGCACCACGTTACAGCGAATCACATCACTCTTGCTG  >  NC_000913_3_pae_tpiA/1477462‑1477723

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.