New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	1477604 =	27 (0.740)	4 (0.120)	4/264	4.5	13.2%	intergenic (+154/‑17)	ydbD/ynbA	PF10971 family putative periplasmic methylglyoxal resistance protein/inner membrane protein
	?	NC_000913_3_pae_tpiA	1477623 =	27 (0.790)					coding (3/606 nt)	ynbA	inner membrane protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATCTGATTAATTGGGGATAATCATTCCTGACAGTGAGTCCCCAATACCTTGATATATTCTGAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAGGCCGACGATGTTTTGGCTTTATAAGCACCACGTTACAGCGAATCACATCACTCTTGCTGCACTGGCGCTTTCTCTTCTTACCGGATTGCTGTTGATGTTGGCGG  >  NC_000913_3_pae_tpiA/1477475‑1477768                                                                                                                                                     |                                                                                                                                                  aTCTGATTAATTGGGGATAATCATTCCTGACAGTGAGTCCCCAATACCTTGATATATTCTGAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATg                                                                                                                                                   >  1:64372/1‑149 (MQ=255)  tCTGATTAATTGGGGATAATCATTCCTGACAGTGAGTCCCCAATACCTTGATATATTCTGAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGa                                                                                                                                                  >  1:360131/1‑149 (MQ=255)    tGATTAATTGGGGATAATCATTCCTCTCAGTGAGACCCTCTTCTATAAAAATCTTCTGAATTTTTAATGAAACGCCCTGGTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACg                                                                                                                                                <  1:623227/149‑1 (MQ=255)     gATTAATTGGGGATAATCATTCCTGACAGTGAGTCCCCAATACCTTGATATATTCTGAATTTTTAATGAAACGGCGAATTACGATATATCCGTCAGACACCTCTAGTCAACTTCACGCACACCGAATTATCAAGGATTGATAATGACGc                                                                                                                                               >  1:147611/1‑149 (MQ=255)              gggATAATCATTCCTGACAGTGAGTCCCCAATACCTTGATATATTCTGAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGa                                                                                                                                      >  1:582032/1‑149 (MQ=255)                                aGTGAGTCCCCAATACCTTGATATATTCTGAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGAAAAAACCGCTCTTTCAGt                                                                                                                    >  1:124139/1‑149 (MQ=255)                                    aGTCCCCAATACCTTGATATATTCTGAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATCACGCCCTACCAGCTAAAACCACACTTTCAGCCGCt                                                                                                                >  2:147974/1‑149 (MQ=255)                                     gTCCCCAATACCTTGATATATTCTGAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTg                                                                                                               <  2:135992/149‑1 (MQ=255)                                      tCCCCAATACCTTGATATATTCTGAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCGAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGt                                                                                                              >  2:577839/1‑149 (MQ=255)                                         ccAATACCTTGATATATTCTGAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTaa                                                                                                           <  1:322617/149‑1 (MQ=255)                                          acaTACCTGGATATATTCTTAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAg                                                                                                          <  1:269987/147‑1 (MQ=255)                                                          tCTGAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAGGCCGACGATGTTTTgg                                                                                          <  2:131954/149‑1 (MQ=255)                                                            tGAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAAGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGAATTGATAATGACGCTCTACCAGATAAAACAGCTCTTTCAGTCGCTGTTAAAGACGACGATGTTTTGGCt                                                                                        >  1:293914/1‑149 (MQ=255)                                                               aTTTTTTATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGTATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAGGCCGACGATGTTTTGGCTTta                                                                                     <  1:10015/149‑1 (MQ=255)                                                               aTTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAGGCCGACGATGTTTTGGCTTta                                                                                     >  1:399158/1‑149 (MQ=255)                                                               aTTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAGGCCGACGATGTTTTGGCTTta                                                                                     <  1:336957/149‑1 (MQ=255)                                                                                        atagCTCCGTTAGGGAAATTGATGCACGAAAACGCAAACCGAATTATCAAGGATTGAGAATGACGCTTTACCAGATAAAACCGCTCTTACAGTCGCTGTTAAGGCCGACGATGTTTTGGCTTTATAAGCACCACGTTACAGCGAatcac                                                            <  2:530082/149‑1 (MQ=255)                                                                                           tctcCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAGGCCGACGATGTTTTGGCTTTATAAGCACCACGTTACAGCGAatcacatc                                                         >  1:420383/1‑149 (MQ=255)                                                                                             tcCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAGGCCGACGATGTTTTGGCTTTATAAGCACCACGTTACAGCGAatcacatcac                                                       >  1:636559/1‑149 (MQ=255)                                                                                             tcCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAGGACGACGATGTTTTGGCTTTATAAGCACAACGTTACAGCAAatcacatcac                                                       >  2:16615/1‑149 (MQ=255)                                                                                               cGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATACCACCACATCGCAAAATGAACCAGCGCCAGCAGGTGCTGTTAAAGCGGACAGCGCGTTTGCGTTATTAGCACCACATTACAGCGAATCACATCActc                                                     >  1:628557/1‑149 (MQ=255)                                                                                                   aGGGGAATTGATGCACCATATCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGAGAAAACCGCTCTTTCAGTCGCTGTTAAGGCCGCAGCTCTTTTGGCTTTATAAGCACCACGTTACAGCTAATCACATCACTCTtgc                                                 <  1:316757/149‑1 (MQ=255)                                                                                                     gggAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAGGCCGACGATGTTTTGGCTTTATAAGCACCACGTTACAGCGAATCACATCACTCTtgctg                                               >  1:503294/1‑149 (MQ=255)                                                                                                     gggAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAGGCCGACGATGTTTTGGCTTTATAAGCACCACGTTACAGCGAATCACATAACTCTtcctg                                               >  1:304912/1‑149 (MQ=255)                                                                                                                                tcaTTATCAATCCTTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAGGCCGACGATGTTTTGGCTTTATAAGCACCACGTTACAGCGAATCACATCACTCTtg                                                  <  1:296813/117‑1 (MQ=255)                                                                                                                                      tCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAGGCCGACGATGTTTTGGCTTTATAAGCACCACGTTACAGCGAATCACATCACTCTTGCTGCACTGGCGCTTTCTCTTCTTACCGGATTGCTGt              <  2:64372/149‑1 (MQ=255)                                                                                                                                       cAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAGGCCGACGATGTTTTGGCTTTATAAGCACCACGTTACAGCGAATCACATCACTCTTGCTGCACTGGCGCTTTCTCTTCTTACCGGATTGCTGtt             <  1:16615/149‑1 (MQ=255)                                                                                                                                        aaGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAGGCCGACGATGTTTTGGCTTTATAAGCACCACGTTACAGCGAATCACATCACTCTTGCTGCACTGGCGCTTTCTCTTCTTACCGGATTGCTGTTg            >  2:370527/1‑149 (MQ=255)                                                                                                                                                  aaTGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAGGCCGACGATGTTTTGGCTTTATAAGCACCACGTTACAGCGAATCACATCACTCTTGCTGCACTGGCGCTTTCTCTTCTTACCGGATTGCTGTTGATGTTggcgg  <  2:527759/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  ATCTGATTAATTGGGGATAATCATTCCTGACAGTGAGTCCCCAATACCTTGATATATTCTGAATTTTTAATGAAACGGCGTGTTGCGATATCTCCGTCAGGGGAATTGATGCACCATAGCGCAAACCGAATTATCAAGGATTGATAATGACGCTCTACCAGATAAAACCGCTCTTTCAGTCGCTGTTAAGGCCGACGATGTTTTGGCTTTATAAGCACCACGTTACAGCGAATCACATCACTCTTGCTGCACTGGCGCTTTCTCTTCTTACCGGATTGCTGTTGATGTTGGCGG  >  NC_000913_3_pae_tpiA/1477475‑1477768

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.