New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 3488981NA (NA)6 (0.180) 6/272 3.6 NA coding (1200/1221 nt) argD bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase
?NC_000913_3_pae_tpiA = 3488989 NA (NA)coding (1192/1221 nt) argD bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase
Rejected: Coverage evenness skew score above cutoff.

AGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCAGCCTCTGCGCCCGCATACAGGAAATCACGCGCCCGACCTT  >  NC_000913_3_pae_tpiA/3488838‑3489129
                                                                                                                                               |                                                                                                                                                    
aGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCTACCACCTTCGCCACcgc                                                                                                                                                 >  1:410384/1‑149 (MQ=255)
      cGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGc                                                                                                                                           <  1:225197/149‑1 (MQ=255)
      cGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGc                                                                                                                                           <  1:314206/149‑1 (MQ=255)
      cGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGc                                                                                                                                           <  1:314506/149‑1 (MQ=255)
       gCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCg                                                                                                                                          >  1:215192/1‑149 (MQ=255)
            aCGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCAAACCACCTTCGCCACCGCGTGGGCGAAACg                                                                                                                                     >  2:555432/1‑149 (MQ=255)
              gtgggttGGCGGAGGCGCAAGTTGCGGGATTCGAAGCCGTAATGCAGGCTAAACCATCAGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGtt                                                                                                                                   <  2:310592/144‑1 (MQ=255)
              gggATTTGGCTGAGTCGCAAGTTGCGGAATTCCTAGGTGTAAGGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGtt                                                                                                                                   <  1:481453/149‑1 (MQ=255)
              gggATTTGGATGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATTCATTTTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGtt                                                                                                                                   <  1:172223/149‑1 (MQ=255)
               ggATTTTGCTGAGTCGCAAGTTGGGGGATTCGAAGGCGTCATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTg                                                                                                                                  <  2:510276/149‑1 (MQ=255)
                           ggcGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATc                                                                                                                      <  1:92893/147‑1 (MQ=255)
                                      cGGGAGTGGAAGGCGTAATGCAGGCTAAACAATCGGAGCAGGCATTCACGCCGCAGCCGACATCTTTTGCCGGGTGCGTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCAt                                                                                                           <  2:205776/149‑1 (MQ=255)
                                       gggATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCCACGCGGTGGCGaaggtgg                                                                                                                                   >  1:101652/1‑119 (MQ=255)
                                            tCGAAGGCTTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATACCCGCATCTTcca                                                                                                     <  2:405267/149‑1 (MQ=255)
                                                   cGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTAGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAg                                                                                              <  1:424329/149‑1 (MQ=255)
                                                      aaTGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTTGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGa                                                                                           <  1:537593/149‑1 (MQ=255)
                                                      aaTGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGa                                                                                           >  1:443963/1‑149 (MQ=255)
                                                           aGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCAGCATCTTCCACCACCAGCGACGGTg                                                                                      >  1:249297/1‑149 (MQ=255)
                                                             gCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCa                                                                                    >  2:281094/1‑149 (MQ=255)
                                                                    gatgggATGAGGCATGGACGGCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGAATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCa                                                                             <  2:582227/145‑1 (MQ=255)
                                                                    cATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCACAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCCCATCTTCCCCCACCAGCCACGGTGCACAACGcc                                                                             >  1:215250/1‑148 (MQ=255)
                                                                      tCGGATAAGGCATTCACGCCGCATTCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCCCCAGCGACGGTGCAAAACGCATc                                                                           >  2:308557/1‑149 (MQ=255)
                                                                         gATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATcaca                                                                        >  1:60408/1‑149 (MQ=255)
                                                                          aTAAGGCATTCACGCCGCATCCGACATCTGTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGAGAGACGTGGCATCCCTTCATCGATATCCGCACCTTCCACCACCAACAACGGTGCAAAACGCCTCACAt                                                                       >  1:609031/1‑149 (MQ=255)
                                                                            aaGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCCCCAGCGACGGTGCAAAACGCATCACAtac                                                                     >  2:116050/1‑147 (MQ=255)
                                                                                               cGACATCTGTTGCCGGATGCTGTGTATCTACGCCGACACCACCTTCTCCACCGCGTGGGCGAAACGTTGCTTCCCTTCATCGATATCCGCATCTTCCACCTCGAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCa                                                  <  2:52946/149‑1 (MQ=255)
                                                                                                gACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGCCGCCACGTTGCCTCCCTTCATCGATATCCGCATCTTCCAAATCCCACGACAGTGCCAAACGCACCACATCCGGTCCAGCATccaccaccac                                                 >  2:312516/1‑148 (MQ=255)
                                                                                                   aTCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGAAAAAAGCTTCATATCCGGTCCGGCATTCAGCACCATTAc                                              >  1:394186/1‑149 (MQ=255)
                                                                                                       tttGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCa                                          >  2:509584/1‑149 (MQ=255)
                                                                                                              gATGCTTCGTATTTACGCCCCAACCACCTTCGCCCCCGCCTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCAGCCTCTg                                   >  2:597828/1‑149 (MQ=255)
                                                                                                                tGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCAGCCTCTgcg                                 <  1:509584/149‑1 (MQ=255)
                                                                                                                     cGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCCGCACCATTACCCCAGCCTCTGCGCCCGc                            >  1:217826/1‑149 (MQ=255)
                                                                                                                      gTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCAGCCTCTGCGCCCgaa                           <  1:185369/149‑3 (MQ=255)
                                                                                                                         tttACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCAt                                                                            >  2:617963/1‑97 (MQ=255)
                                                                                                                         tttACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCAt                                                                            <  1:617963/97‑1 (MQ=255)
                                                                                                                           tACGCCCCACCCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATAGTAAATGACATCGTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCAGCCTCTGCGCCCGCATACAg                      <  1:144552/149‑1 (MQ=255)
                                                                                                                            aCGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCAGCCTCTGCGCCCGCAtcccgc                     >  2:127290/1‑144 (MQ=255)
                                                                                                                                     ccaccTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATAGCCGCATCTTCCACCACCAGCGACGGTGGAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCAGCCTCTGCGCCCGCATACAGGAAATCAcgc            <  2:562830/149‑1 (MQ=255)
                                                                                                                                              ccACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCCACGAAGCAGCGGAACGCAACGCCGCCGCGCCGGCATTCAGCACCATTACGCCAGCCTCTGCGCCCGAATACAGGAAATCACGCGCCCGACCt   >  1:610551/1‑149 (MQ=255)
                                                                                                                                               cACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCAGCCTCTGCGCCCGCATACAGGAAATCACGCGCCCGACCtt  >  1:404141/1‑149 (MQ=255)
                                                                                                                                               |                                                                                                                                                    
AGCGACCGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCAGCCTCTGCGCCCGCATACAGGAAATCACGCGCCCGACCTT  >  NC_000913_3_pae_tpiA/3488838‑3489129

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.