New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 3488981NA (NA)6 (0.180) 6/272 3.6 NA coding (1200/1221 nt) argD bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase
?NC_000913_3_pae_tpiA = 3488989 NA (NA)coding (1192/1221 nt) argD bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase
Rejected: Coverage evenness skew score above cutoff.

CGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCAGCCTCTGCGCCCGCATACAGGAAATCACGCGCCCGACCTTTGTACTGT  >  NC_000913_3_pae_tpiA/3488844‑3489137
                                                                                                                                                 |                                                                                                                                                    
cGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGc                                                                                                                                                   <  1:225197/149‑1 (MQ=255)
cGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGc                                                                                                                                                   <  1:314206/149‑1 (MQ=255)
cGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGc                                                                                                                                                   <  1:314506/149‑1 (MQ=255)
 gCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCg                                                                                                                                                  >  1:215192/1‑149 (MQ=255)
      aCGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCAAACCACCTTCGCCACCGCGTGGGCGAAACg                                                                                                                                             >  2:555432/1‑149 (MQ=255)
        gtgggttGGCGGAGGCGCAAGTTGCGGGATTCGAAGCCGTAATGCAGGCTAAACCATCAGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGtt                                                                                                                                           <  2:310592/144‑1 (MQ=255)
        gggATTTGGCTGAGTCGCAAGTTGCGGAATTCCTAGGTGTAAGGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGtt                                                                                                                                           <  1:481453/149‑1 (MQ=255)
        gggATTTGGATGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATTCATTTTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGtt                                                                                                                                           <  1:172223/149‑1 (MQ=255)
         ggATTTTGCTGAGTCGCAAGTTGGGGGATTCGAAGGCGTCATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTg                                                                                                                                          <  2:510276/149‑1 (MQ=255)
                     ggcGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATc                                                                                                                              <  1:92893/147‑1 (MQ=255)
                                cGGGAGTGGAAGGCGTAATGCAGGCTAAACAATCGGAGCAGGCATTCACGCCGCAGCCGACATCTTTTGCCGGGTGCGTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCAt                                                                                                                   <  2:205776/149‑1 (MQ=255)
                                 gggATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCCACGCGGTGGCGaaggtgg                                                                                                                                           >  1:101652/1‑119 (MQ=255)
                                      tCGAAGGCTTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATACCCGCATCTTcca                                                                                                             <  2:405267/149‑1 (MQ=255)
                                             cGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTAGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAg                                                                                                      <  1:424329/149‑1 (MQ=255)
                                                aaTGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTTGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGa                                                                                                   <  1:537593/149‑1 (MQ=255)
                                                aaTGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGa                                                                                                   >  1:443963/1‑149 (MQ=255)
                                                     aGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCAGCATCTTCCACCACCAGCGACGGTg                                                                                              >  1:249297/1‑149 (MQ=255)
                                                       gCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCa                                                                                            >  2:281094/1‑149 (MQ=255)
                                                              gatgggATGAGGCATGGACGGCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGAATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCa                                                                                     <  2:582227/145‑1 (MQ=255)
                                                              cATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCACAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCCCATCTTCCCCCACCAGCCACGGTGCACAACGcc                                                                                     >  1:215250/1‑148 (MQ=255)
                                                                tCGGATAAGGCATTCACGCCGCATTCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCCCCAGCGACGGTGCAAAACGCATc                                                                                   >  2:308557/1‑149 (MQ=255)
                                                                   gATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATcaca                                                                                >  1:60408/1‑149 (MQ=255)
                                                                    aTAAGGCATTCACGCCGCATCCGACATCTGTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGAGAGACGTGGCATCCCTTCATCGATATCCGCACCTTCCACCACCAACAACGGTGCAAAACGCCTCACAt                                                                               >  1:609031/1‑149 (MQ=255)
                                                                      aaGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCCCCAGCGACGGTGCAAAACGCATCACAtac                                                                             >  2:116050/1‑147 (MQ=255)
                                                                                         cGACATCTGTTGCCGGATGCTGTGTATCTACGCCGACACCACCTTCTCCACCGCGTGGGCGAAACGTTGCTTCCCTTCATCGATATCCGCATCTTCCACCTCGAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCa                                                          <  2:52946/149‑1 (MQ=255)
                                                                                          gACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGCCGCCACGTTGCCTCCCTTCATCGATATCCGCATCTTCCAAATCCCACGACAGTGCCAAACGCACCACATCCGGTCCAGCATccaccaccac                                                         >  2:312516/1‑148 (MQ=255)
                                                                                             aTCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGAAAAAAGCTTCATATCCGGTCCGGCATTCAGCACCATTAc                                                      >  1:394186/1‑149 (MQ=255)
                                                                                                 tttGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCa                                                  >  2:509584/1‑149 (MQ=255)
                                                                                                        gATGCTTCGTATTTACGCCCCAACCACCTTCGCCCCCGCCTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCAGCCTCTg                                           >  2:597828/1‑149 (MQ=255)
                                                                                                          tGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCAGCCTCTgcg                                         <  1:509584/149‑1 (MQ=255)
                                                                                                               cGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCCGCACCATTACCCCAGCCTCTGCGCCCGc                                    >  1:217826/1‑149 (MQ=255)
                                                                                                                gTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCAGCCTCTGCGCCCgaa                                   <  1:185369/149‑3 (MQ=255)
                                                                                                                   tttACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCAt                                                                                    >  2:617963/1‑97 (MQ=255)
                                                                                                                   tttACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCAt                                                                                    <  1:617963/97‑1 (MQ=255)
                                                                                                                     tACGCCCCACCCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATAGTAAATGACATCGTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCAGCCTCTGCGCCCGCATACAg                              <  1:144552/149‑1 (MQ=255)
                                                                                                                      aCGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCAGCCTCTGCGCCCGCAtcccgc                             >  2:127290/1‑144 (MQ=255)
                                                                                                                               ccaccTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATAGCCGCATCTTCCACCACCAGCGACGGTGGAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCAGCCTCTGCGCCCGCATACAGGAAATCAcgc                    <  2:562830/149‑1 (MQ=255)
                                                                                                                                        ccACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCCACGAAGCAGCGGAACGCAACGCCGCCGCGCCGGCATTCAGCACCATTACGCCAGCCTCTGCGCCCGAATACAGGAAATCACGCGCCCGACCt           >  1:610551/1‑149 (MQ=255)
                                                                                                                                         cACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCAGCCTCTGCGCCCGCATACAGGAAATCACGCGCCCGACCtt          >  1:404141/1‑149 (MQ=255)
                                                                                                                                                 gggCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCAGCCTCTGCGCCCGCATACAGGAAATCACGCGCCCGACCTTTGTACtgt  <  2:60408/149‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                    
CGCATCACGGGATTTGGCTGAGTCGCAAGTTGCGGGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAACGTTGCATCCCTTCATCGATATCCGCATCTTCCACCACCAGCGACGGTGCAAAACGCATCACATCCGGTCCGGCATTCAGCACCATTACGCCAGCCTCTGCGCCCGCATACAGGAAATCACGCGCCCGACCTTTGTACTGT  >  NC_000913_3_pae_tpiA/3488844‑3489137

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.