New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 3376260	43 (0.920)	6 (0.140)	6/258	5.0	13.3%	intergenic (+24/+19)	dcuD/sspB	putative transporter/ClpXP protease specificity enhancing factor
	?	NC_000913_3_pae_tpiA	= 3376265	39 (0.910)					intergenic (+29/+14)	dcuD/sspB	putative transporter/ClpXP protease specificity enhancing factor
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGGTGGTGGTCGTTACGTCAGGAATTGCAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTGGCTTGTCGCCATCAATAACCGACATAACGGTTTCGTTGTC  >  NC_000913_3_pae_tpiA/3376112‑3376404                                                                                                                                                     |                                                                                                                                                 cGGTGGTGGTCGTTACGTCAGGAATTGCAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAATACAAAACAGgcc                                                                                                                                                  <  1:508393/149‑1 (MQ=255)       ttgtCGTGACGTCAGGAATTGCAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATGGCCACAATCACGCTATTGTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTgg                                                                                                                                            <  2:24078/147‑1 (MQ=255)       tggtCGTTACGTCAGGAATTGCAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTgg                                                                                                                                            <  1:6001/149‑1 (MQ=255)          tCGTTACGTCAGGAATTGCAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCGGTCGGTTTCGTGGTGAATATAATTGCCACAATCAAGCTATTTTATTAAGCCACTAAAAAGACCAAACAAGCCAACTGGGcc                                                                                                                                         >  2:728980/1‑149 (MQ=255)                 gTCAGGAATTGCAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTg                                                                                                                                  <  1:103673/149‑1 (MQ=255)                 gTCAGGAATTGCAGGCGTTTCGCCGTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTg                                                                                                                                  <  1:103445/149‑1 (MQ=255)                  tCAGGAATTGCAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCAAGAATCACGCTATGTTATTAAGTGATTAAAAAGACGAAACAGGCCGCCTGGGCCTGTTTTGt                                                                                                                                 >  1:144667/1‑149 (MQ=255)                    aGGAATTGCAGGCGTTTCGCCTTTTGCAGTGGTGAAGCGGACAGCGATCCCCATGACAGTCGGTTTCGTGGTGAATCTGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACACAACACGCCGACTGGGCCTGTTTTGtct                                                                                                                               >  2:139867/1‑147 (MQ=255)                      gAATTGCAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCCGTAGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTa                                                                                                                             >  1:527478/1‑149 (MQ=255)                      gAATTGCAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTa                                                                                                                             <  2:634662/149‑1 (MQ=255)                         ttGCAGGCGTTGCGTCTTTGGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACtt                                                                                                                          <  2:301689/149‑1 (MQ=255)                          tGCAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTc                                                                                                                         <  2:60146/149‑1 (MQ=255)                           gCAGGCGTTTCGCCTTTTACTGTGGTGAAGCGGAGAGCGATCCCCATGGCAGTCGCTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAGATAGACTAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTca                                                                                                                        >  2:646803/1‑149 (MQ=255)                              ggCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACaa                                                                                                                     <  1:649928/149‑1 (MQ=255)                                          tttGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCg                                                                                                         <  1:67633/149‑1 (MQ=255)                                                     aaaGCGGACAGCGATCCCCATGGCAGAGGGTTTAGTGGTGAATATGATTGCCACAATCACGCAATTTTATTAAGTCATTAAAAAGACCAAACAGCCCACCTCGGACTGTTCTGTATAACTTCCCAACCAGCAACGCCCGTCGaccacca                                                                                              >  2:396326/2‑148 (MQ=255)                                                        gCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTATGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCCCCGCgt                                                                                           >  1:623536/1‑149 (MQ=255)                                                         cGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCgtg                                                                                          <  1:456605/149‑1 (MQ=255)                                                            aCAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCgtggcg                                                                                       >  1:175615/1‑147 (MQ=255)                                                             cAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGtggtgg                                                                                      <  1:164120/149‑1 (MQ=255)                                                                      ccATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAgg                                                                             <  1:59673/149‑1 (MQ=255)                                                                      ccAAGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAgg                                                                             <  2:461583/149‑1 (MQ=255)                                                                        aTGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGtt                                                                           >  2:758249/1‑149 (MQ=255)                                                                            cAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATc                                                                       <  2:535919/149‑1 (MQ=255)                                                                            cAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATc                                                                       <  1:646803/149‑1 (MQ=255)                                                                               tCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTc                                                                                                      <  1:33984/115‑1 (MQ=255)                                                                               tCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTc                                                                                                      >  2:33984/1‑115 (MQ=255)                                                                                tggTTTCGTGCTGAATATGGTTGCCACATTCACGCTATTTTATTAAGTCATTAAAAAGACAACACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCa                                                                   <  2:725561/148‑1 (MQ=255)                                                                                cGGTTTGGTGGTGAATAGGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCa                                                                   <  2:461831/149‑1 (MQ=255)                                                                                        tggtgAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCgtggt                                                                                        <  1:65799/120‑1 (MQ=255)                                                                                        tggtgAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCgtggt                                                                                        >  2:65799/1‑120 (MQ=255)                                                                                        tggtgAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAgt                                                           <  1:134924/149‑1 (MQ=255)                                                                                          gtgAATATGATTGCCACAATCACGTTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAgtgt                                                         <  2:595167/149‑1 (MQ=255)                                                                                          gtgAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGACGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACAACCGCGTGTTGACTGCGGAGGTTCATCGTCAGGATGAggat                                                         >  2:42767/1‑146 (MQ=255)                                                                                                     ttccccaATCAAGCTATTATATTAAGCCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTATTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCCGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGa                                              <  2:715102/144‑1 (MQ=255)                                                                                                        cacaATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGGTCATCGTCAGGATGAGTGTCATCATCGTGATCt                                           >  1:219320/1‑149 (MQ=255)                                                                                                           aaTCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTGGc                                        <  2:635841/149‑1 (MQ=255)                                                                                                                cGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCGCAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTGGCTTGTc                                   <  2:702953/149‑1 (MQ=255)                                                                                                                              gTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTGGCTTGTCGCCATCAATAACCg                     >  1:55660/1‑149 (MQ=255)                                                                                                                                 aTTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACCCGTAATGCCGGTCGCCCACCGCATGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTGCGTTGTCGCCCTCAATACCCGCCa                  >  1:57876/1‑149 (MQ=255)                                                                                                                                      aaaGACAAAACAGGCCGCCTGGGCAGGTTTTGTCTTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGGCAAGATGAGTGTCACCCTCGTGATCTGGCTTGTCGCCATCCATAACCGACATacac             >  2:213907/1‑146 (MQ=255)                                                                                                                                       aaGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAgt                                                           >  2:133378/1‑102 (MQ=255)                                                                                                                                       aaGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAgt                                                           <  1:133378/102‑1 (MQ=255)                                                                                                                                              aaCAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTGGCTTGTCGCCATCAATAACCGACATAACGGTTTCGtt     >  1:130839/1‑149 (MQ=255)                                                                                                                                                 aGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTGACTTGTCGCCATCAATAAACGACATAACGGTTTCGTTGTc  >  2:608034/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                 CGGTGGTGGTCGTTACGTCAGGAATTGCAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTGGCTTGTCGCCATCAATAACCGACATAACGGTTTCGTTGTC  >  NC_000913_3_pae_tpiA/3376112‑3376404

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.