New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 3376260	43 (0.920)	6 (0.140)	6/258	5.0	13.3%	intergenic (+24/+19)	dcuD/sspB	putative transporter/ClpXP protease specificity enhancing factor
	?	NC_000913_3_pae_tpiA	= 3376265	39 (0.910)					intergenic (+29/+14)	dcuD/sspB	putative transporter/ClpXP protease specificity enhancing factor
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGGTCGTTACGTCAGGAATTGCAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTGGCTTGTCGCCATCAATAACCGACATAACGGTTTCGTTGTCTGCCGAT  >  NC_000913_3_pae_tpiA/3376118‑3376411                                                                                                                                                    |                                                                                                                                                   ttgtCGTGACGTCAGGAATTGCAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATGGCCACAATCACGCTATTGTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTgg                                                                                                                                                   <  2:24078/147‑1 (MQ=255) tggtCGTTACGTCAGGAATTGCAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTgg                                                                                                                                                   <  1:6001/149‑1 (MQ=255)    tCGTTACGTCAGGAATTGCAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCGGTCGGTTTCGTGGTGAATATAATTGCCACAATCAAGCTATTTTATTAAGCCACTAAAAAGACCAAACAAGCCAACTGGGcc                                                                                                                                                >  2:728980/1‑149 (MQ=255)           gTCAGGAATTGCAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTg                                                                                                                                         <  1:103673/149‑1 (MQ=255)           gTCAGGAATTGCAGGCGTTTCGCCGTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTg                                                                                                                                         <  1:103445/149‑1 (MQ=255)            tCAGGAATTGCAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCAAGAATCACGCTATGTTATTAAGTGATTAAAAAGACGAAACAGGCCGCCTGGGCCTGTTTTGt                                                                                                                                        >  1:144667/1‑149 (MQ=255)              aGGAATTGCAGGCGTTTCGCCTTTTGCAGTGGTGAAGCGGACAGCGATCCCCATGACAGTCGGTTTCGTGGTGAATCTGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACACAACACGCCGACTGGGCCTGTTTTGtct                                                                                                                                      >  2:139867/1‑147 (MQ=255)                gAATTGCAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCCGTAGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTa                                                                                                                                    >  1:527478/1‑149 (MQ=255)                gAATTGCAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTa                                                                                                                                    <  2:634662/149‑1 (MQ=255)                   ttGCAGGCGTTGCGTCTTTGGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACtt                                                                                                                                 <  2:301689/149‑1 (MQ=255)                    tGCAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTc                                                                                                                                <  2:60146/149‑1 (MQ=255)                     gCAGGCGTTTCGCCTTTTACTGTGGTGAAGCGGAGAGCGATCCCCATGGCAGTCGCTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAGATAGACTAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTca                                                                                                                               >  2:646803/1‑149 (MQ=255)                        ggCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACaa                                                                                                                            <  1:649928/149‑1 (MQ=255)                                    tttGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCg                                                                                                                <  1:67633/149‑1 (MQ=255)                                               aaaGCGGACAGCGATCCCCATGGCAGAGGGTTTAGTGGTGAATATGATTGCCACAATCACGCAATTTTATTAAGTCATTAAAAAGACCAAACAGCCCACCTCGGACTGTTCTGTATAACTTCCCAACCAGCAACGCCCGTCGaccacca                                                                                                     >  2:396326/2‑148 (MQ=255)                                                  gCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTATGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCCCCGCgt                                                                                                  >  1:623536/1‑149 (MQ=255)                                                   cGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCgtg                                                                                                 <  1:456605/149‑1 (MQ=255)                                                      aCAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCgtggcg                                                                                              >  1:175615/1‑147 (MQ=255)                                                       cAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGtggtgg                                                                                             <  1:164120/149‑1 (MQ=255)                                                                ccATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAgg                                                                                    <  1:59673/149‑1 (MQ=255)                                                                ccAAGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAgg                                                                                    <  2:461583/149‑1 (MQ=255)                                                                  aTGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGtt                                                                                  >  2:758249/1‑149 (MQ=255)                                                                      cAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATc                                                                              <  1:646803/149‑1 (MQ=255)                                                                      cAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATc                                                                              <  2:535919/149‑1 (MQ=255)                                                                         tCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTc                                                                                                             >  2:33984/1‑115 (MQ=255)                                                                         tCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTc                                                                                                             <  1:33984/115‑1 (MQ=255)                                                                          tggTTTCGTGCTGAATATGGTTGCCACATTCACGCTATTTTATTAAGTCATTAAAAAGACAACACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCa                                                                          <  2:725561/148‑1 (MQ=255)                                                                          cGGTTTGGTGGTGAATAGGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCa                                                                          <  2:461831/149‑1 (MQ=255)                                                                                  tggtgAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCgtggt                                                                                               >  2:65799/1‑120 (MQ=255)                                                                                  tggtgAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCgtggt                                                                                               <  1:65799/120‑1 (MQ=255)                                                                                  tggtgAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAgt                                                                  <  1:134924/149‑1 (MQ=255)                                                                                    gtgAATATGATTGCCACAATCACGTTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAgtgt                                                                <  2:595167/149‑1 (MQ=255)                                                                                    gtgAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGACGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACAACCGCGTGTTGACTGCGGAGGTTCATCGTCAGGATGAggat                                                                >  2:42767/1‑146 (MQ=255)                                                                                               ttccccaATCAAGCTATTATATTAAGCCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTATTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCCGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGa                                                     <  2:715102/144‑1 (MQ=255)                                                                                                  cacaATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGGTCATCGTCAGGATGAGTGTCATCATCGTGATCt                                                  >  1:219320/1‑149 (MQ=255)                                                                                                     aaTCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTGGc                                               <  2:635841/149‑1 (MQ=255)                                                                                                          cGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCGCAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTGGCTTGTc                                          <  2:702953/149‑1 (MQ=255)                                                                                                                        gTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTGGCTTGTCGCCATCAATAACCg                            >  1:55660/1‑149 (MQ=255)                                                                                                                           aTTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACCCGTAATGCCGGTCGCCCACCGCATGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTGCGTTGTCGCCCTCAATACCCGCCa                         >  1:57876/1‑149 (MQ=255)                                                                                                                                aaaGACAAAACAGGCCGCCTGGGCAGGTTTTGTCTTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGGCAAGATGAGTGTCACCCTCGTGATCTGGCTTGTCGCCATCCATAACCGACATacac                    >  2:213907/1‑146 (MQ=255)                                                                                                                                 aaGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAgt                                                                  >  2:133378/1‑102 (MQ=255)                                                                                                                                 aaGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAgt                                                                  <  1:133378/102‑1 (MQ=255)                                                                                                                                        aaCAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTGGCTTGTCGCCATCAATAACCGACATAACGGTTTCGtt            >  1:130839/1‑149 (MQ=255)                                                                                                                                           aGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTGACTTGTCGCCATCAATAAACGACATAACGGTTTCGTTGTc         >  2:608034/1‑149 (MQ=255)                                                                                                                                                gcctgtgcctgtTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTGGCTTGTCGCCATCAATAACCGACATAACGGTTTCGTTGTCTGCCg    <  2:527478/149‑1 (MQ=255)                                                                                                                                                  cTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTGGCTTGTCGCCATCAATAACCGACATAACGGTTTCGTTGTCTGCCGAt  <  1:178095/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   TGGTCGTTACGTCAGGAATTGCAGGCGTTTCGCCTTTTGCGGTGGTGAAGCGGACAGCGATCCCCATGGCAGTCGGTTTCGTGGTGAATATGATTGCCACAATCACGCTATTTTATTAAGTCATTAAAAAGACAAAACAGGCCGCCTGGGCCTGTTTTGTATTACTTCACAACGCGTAATGCCGGTCGACCACCGCGTGGTGGCTGCGGAGGTTCATCGTCAGGATGAGTGTCATCATCGTGATCTGGCTTGTCGCCATCAATAACCGACATAACGGTTTCGTTGTCTGCCGAT  >  NC_000913_3_pae_tpiA/3376118‑3376411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.