New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 3220891	NA (NA)	7 (0.200)	6/256	3.7	NA	noncoding (12/31 nt)	REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913_3_pae_tpiA	= 3220898	NA (NA)					noncoding (19/31 nt)	REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

GCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/3220739‑3220891 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcggatggcgaCGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATG  <  NC_000913_3_pae_tpiA/3220898‑3220846                                                                                                                                                                                                                GCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATG                                                           >  2:55954/1‑149   CGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAATGTGAGCTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGCAGAAGCGCACTATCAAATCCGATGGC                                                         >  1:343461/1‑149        CGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAACGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAGTATCAAATAGGATGGCacaac                                                    >  2:33983/1‑144                    CCAAAACGATCCGGAGTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGACGTCGTATCGCCATC                                        <  2:349139/149‑1                    CCAAAACGAGCGTCATTGAACCGCCACTGACACGGACCATTGAACAGTGGGAACTGGTGATCAAAGCGGCGCGTAACGCGCTGGCGGCCATGCGAGTAAGTGCCGAAGAAGCGTAATATCAAATCGGATGGCGACGTCGTATCGCCATC                                        <  2:414745/149‑1                         ccggTCCGGATTGAACCGCCACTGACACTGTCCATTGAACAGTGTGAGCTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGGAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGTGACGTCGTATCGCCATCCGATT                                   <  2:307480/145‑1                                                                          TGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGACGTCGTATCGCCATCCGATTTGATAT                             <  1:58431/106‑1                                                                          TGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGACGTCGTATCGCCATCCGATTTGATAT                             >  2:58431/1‑106                                                                                                            CATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATG  <  1:81019/99‑1                                                                                                            CATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGACGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATG  >  2:81019/1‑99                                                                                                                                                                                                                GCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/3220739‑3220891 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcggatggcgaCGTCGTATCGCCATCCGATTTGATATTACGCTTCTTCGACACTTACTCGCATG  <  NC_000913_3_pae_tpiA/3220898‑3220846

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.