New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 3220891	NA (NA)	7 (0.200)	6/256	3.7	NA	noncoding (12/31 nt)	REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913_3_pae_tpiA	= 3220898	NA (NA)					noncoding (19/31 nt)	REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

GCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGTTTCACCACGCATTTTC  >  NC_000913_3_pae_tpiA/3220747‑3221032                                                                                                                                                 |                                                                                                                                              gCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATacg                                                                                                                                           >  2:284213/1‑149 (MQ=255)  cTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCCAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGCTacga                                                                                                                                          >  2:430439/1‑149 (MQ=255)   tCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATAGGATGGCGATacgac                                                                                                                                         >  1:101353/1‑149 (MQ=255)                     tCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGCCGATACGACGTCGCCATCCGATCtttt                                                                                                                       >  2:371324/1‑149 (MQ=255)                      ccGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGACATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCttttt                                                                                                                      <  1:55954/149‑1 (MQ=255)                         cATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTtata                                                                                                                   <  1:542269/149‑1 (MQ=255)                            tGAACCGCCACTGACACTGGCCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGAGATACGAAGTCGCCATCCGATCTTTTTATacgt                                                                                                                <  2:344801/149‑2 (MQ=255)                                           actgacCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCACCATCCGATCTTTTTATACGCCCCGTACGCCCGCAg                                                                                                 >  2:190236/1‑149 (MQ=255)                                              gacCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGca                                                                                              >  1:560404/1‑149 (MQ=255)                                                  aTTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGcatcat                                                                                          >  1:261172/1‑149 (MQ=255)                                                         aGTGTGAACTGGTGATCAAAGGGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGGCGCCATCCGATCTTTTTATACGACGCGTACGCTCGCAGGCATCATCCGCTcc                                                                                   <  2:345969/149‑1 (MQ=255)                                                           tgggAACTGGTGAGCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTAGACGACGCGTACGCCCGCAGGCATCATCCGCTCCgg                                                                                 <  2:119188/146‑1 (MQ=255)                                                             tgAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCg                                                                               >  1:648183/1‑149 (MQ=255)                                                              gAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCgg                                                                              >  1:214035/1‑148 (MQ=255)                                                                aCTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTATCGAAGAAGCGTAATATCAAATCGGATGGCGCTCCGACGTAGCCGTCCGATATTCCTATGAGACGCGTATGCCCGCAGGCATCCTCCGCTCCGGCGTTa                                                                            >  1:93915/1‑149 (MQ=255)                                                                    gTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCCTTAACAg                                                                        >  2:637489/1‑149 (MQ=255)                                                                       aTCACAGCAGCGCGTAAGGCGCTGGCGGCCAAGCGAGTAAGTGACAAAGAAGGGTAAAAACAAATCGGATGGCGATACGACGTGGCCATCCGATCTTTTTATACGACACGTACGCCCGCAGCCATCGTCCCCTCCGCCGTTAACAGCAc                                                                     >  2:322157/1‑149 (MQ=255)                                                                               cgcgcGTGAGGCGCTGGCGGCCAGGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCAc                                                             <  1:2351/148‑1 (MQ=255)                                                                                gcgcGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACt                                                            >  1:377640/1‑149 (MQ=255)                                                                                   cgTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACCCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGcc                                                         >  1:641548/1‑149 (MQ=255)                                                                                     tAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGt                                                       >  2:66860/1‑149 (MQ=255)                                                                                       aGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCa                                                     <  1:561174/149‑1 (MQ=255)                                                                                        ggCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCAt                                                    <  1:66860/149‑1 (MQ=255)                                                                                                 ggcCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTACCGTCATCGGTTTCCg                                           <  2:560404/149‑1 (MQ=255)                                                                                                         gAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTCACCGCACGCTTTCACTGCCGGCATCGGGTTCCGCACacaac                                   >  1:286261/1‑149 (MQ=255)                                                                                                            caaGGGTAGAAGAAGCGTAAGATCAAATCGGAGGGCGATACGACGTCGCCCTTCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAgc                                <  2:580409/148‑1 (MQ=255)                                                                                                              aGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCCCATACAACAgcat                              <  2:261172/149‑1 (MQ=255)                                                                                                                tgtCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAccatgc                            >  2:659565/1‑149 (MQ=255)                                                                                                                  tCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAgcatgcat                          >  2:40382/1‑149 (MQ=255)                                                                                                                     aagaagCGTAATATCAAATCGGATGGCGATACGGCGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTcc                       >  1:191605/1‑149 (MQ=255)                                                                                                                            gTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGgtt                >  1:455959/1‑149 (MQ=255)                                                                                                                                  tCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGTTTcaccac          >  1:366524/1‑149 (MQ=255)                                                                                                                                     aaTCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGTTTCACCACGCa       >  2:516128/1‑149 (MQ=255)                                                                                                                                          gATGGCGATACGACGTTGCCATCCGATCTTTTTATACGACGTGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGTTTCACCACGCATTTTc  <  1:609418/149‑1 (MQ=255)                                                                                                                                          gATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGTTTCACCACGCATTTTc  <  1:371324/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                              GCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGTTTCACCACGCATTTTC  >  NC_000913_3_pae_tpiA/3220747‑3221032

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.