New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	141977 =	NA (NA)	5 (0.080)	5/264	8.3	NA	intergenic (+10/+31)	hpt/can	hypoxanthine phosphoribosyltransferase/carbonic anhydrase
	?	NC_000913_3_pae_tpiA	142000 =	NA (NA)					intergenic (+33/+8)	hpt/can	hypoxanthine phosphoribosyltransferase/carbonic anhydrase
Rejected: Coverage evenness skew score above cutoff.

CGTCGTGAAGTGAACGTCCCGGTAGAATTTATCGGTTTCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAAGGGTTTCGCGGTTGGT‑GGCGGTAACATCCAGATCACGCAGCAAGCCGTCGTGAATG  >  NC_000913_3_pae_tpiA/141830‑142125                                                                                                                                                    |                                                                                                                                                      cgtcgtGTAGTGAACGTCCCGGTAGAATTTATCGGTTGCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCGTTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCCAAGTGATTCTGCTGTACGATTAAGTGTGAAGTTg                                                                                                                                                      >  2:109852/1‑149 (MQ=255)   tcgtGAAGTGAACGTCCCGGTAGAATTTATCGGTTTCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGCAAGTGTGAAGTTGcc                                                                                                                                                    >  2:847545/1‑149 (MQ=255)      tgaagtgaaCGTCCCGGTAGAATTTATCGGTTTCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGACAAAGTGATTCTGCTGGACGAGTAAGTGCGAAGTTGCCGGa                                                                                                                                                 >  2:840911/1‑149 (MQ=255)      tgaagtgaaCGTCCCGGTAGAATTTATCGGTTTCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCACTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGGGTGAAGTTGCCGGa                                                                                                                                                 >  1:654768/1‑149 (MQ=255)       gaagtgaaCGTCCCGGTAGAATTTATCGGTTTCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGAt                                                                                                                                                <  1:31129/149‑1 (MQ=255)          gtgaaCGTCCCGGTAGAATTTATCGGTTTCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGCCGAGTAAGTGTGAAGTTGCCGGAtgtg                                                                                                                                             >  1:294407/1‑149 (MQ=255)           tgaaCGTCCCGGTAGAATTTATCGGTTTCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGAGGGGTAAGTGTGAAGTTGCCGGATgtgt                                                                                                                                            >  1:631118/1‑149 (MQ=255)           tgaaCGTCCCGGTAGAATTTATCGGTTTCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATgtgt                                                                                                                                            >  2:649716/1‑149 (MQ=255)            gaaCGTCCCGGTAGAATTTTTCGGTTTCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGtt                                                                                                                                           <  2:374672/149‑1 (MQ=255)            gaaCGTCCCGGTAGAAGTTATCGGTTTCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGtt                                                                                                                                           <  1:680773/149‑1 (MQ=255)                   ccGGTAGAATTTATCGGTTTCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAATTGCCGGATGTGTTGCAACCg                                                                                                                                    >  1:184066/1‑149 (MQ=255)                   ccGGTAGAATTTATCGGTTTCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGGGTGAAGTTGCCGGAGGTGTTGAATcgg                                                                                                                                    >  1:861543/1‑147 (MQ=255)                    cGGTAGAATTTATCGGTTTCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTTCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCgg                                                                                                                                   <  2:219049/149‑1 (MQ=255)                      gTAGAATTTATCGGTTTCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCggca                                                                                                                                 >  2:91038/1‑149 (MQ=255)                       tataagttATCTGTTTCTCGGTCCCGGATGAGTTTGTGGGGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCggcat                                                                                                                                <  2:282059/143‑1 (MQ=255)                       tAGAATTTATCGGTTTCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCggcat                                                                                                                                <  2:166604/149‑1 (MQ=255)                        aGAATTTATCGGTTTCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCggcatg                                                                                                                               <  1:649716/149‑1 (MQ=255)                         gAATTTATCGGTTTCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATACgggatgg                                                                                                                              >  1:1046014/1‑149 (MQ=255)                            tttATCGGTTTCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCggcatggcat                                                                                                                           >  2:1064531/1‑149 (MQ=255)                             ttATCGGTTTCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTGTATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCAtt                                                                                                                          <  2:298282/149‑1 (MQ=255)                                tCGGTTTCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCAttttt                                                                                                                       >  1:1094776/1‑149 (MQ=255)                                 cGGTTTCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTa                                                                                                                      <  1:91038/149‑1 (MQ=255)                                   gTTTCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAGAGTGATTCTGCTGGACGCGTAAGTGTGAAGTTGCCGGATGTGTTGCCTCCGGCCTGGCATTTTTAtt                                                                                                                    >  1:821018/1‑149 (MQ=255)                                   gTTTCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCCTCAGCCCTAGCAtttttttt                                                                                                                    >  2:748743/1‑149 (MQ=255)                                   gTTTCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTAtt                                                                                                                    >  2:368384/1‑149 (MQ=255)                                   gTTTCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTAtt                                                                                                                    >  1:820042/1‑149 (MQ=255)                                   gTTTCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTAtt                                                                                                                    >  1:155930/1‑149 (MQ=255)                                   gTTTCTCGATCCCGGATGAGTTTGCGCTGGGTGTCGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCCTGGCATTTTTCtt                                                                                                                    >  2:819376/1‑149 (MQ=255)                                     ttCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTtg                                                                                                                  <  2:155930/149‑1 (MQ=255)                                          gATCCCGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTCGCGGCATCTGCGGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATTGCATTTTTCTTTGTGGtt                                                                                                             >  2:93087/1‑149 (MQ=255)                                           attcctgATGAGTTTGTGGTGGGTTTCGTCATTGACTACGCAAAGCGTTACCGTCATCTGCCGTATATCGGAAAAGTGATTGTACTGGTCGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTg                                                                                                            <  2:597709/143‑1 (MQ=255)                                           aTCCCGGATGAGGTTGTGGTGGGTTACGGCATTGATTACGCACAGCGCTCCCGTCATCTGCCGTAGATTGGCAAAGGGATTCTGCTGGACGAAGAAGTGTGAAGTGGCCGGATGTGTTGCATGCGGCAGGGGATTTTTATCTGTGGTTg                                                                                                            >  2:130548/1‑149 (MQ=255)                                             cccGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGc                                                                                                          <  1:737506/149‑1 (MQ=255)                                                         tgtgGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATACGGCATTGGATTTGTATTTGTGGTTGGCGTGTTTCAGCtt                                                                                              <  1:847342/149‑1 (MQ=255)                                                             gtggGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCAGGCATGGCATTTTCGTCTGGGGTTGGGGTGTTTCAGCttagga                                                                                          >  2:753468/1‑145 (MQ=255)                                                              tggGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATAGGCAGAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGt                                                                                         >  1:1076090/1‑149 (MQ=255)                                                                 gTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCACCGTGTTTCGCTTTGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTgg                                                                                      <  1:1118560/149‑1 (MQ=255)                                                                 gTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGAAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTgg                                                                                      >  1:45734/1‑149 (MQ=255)                                                                  ttACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTg                                                                                       >  2:390345/1‑147 (MQ=255)                                                                  ttACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTg                                                                                       <  1:390345/147‑1 (MQ=255)                                                                  ttACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGa                                                                                     <  2:72597/149‑1 (MQ=255)                                                                       gCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATcc                                                                                >  1:137353/1‑149 (MQ=255)                                                                             aTTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGAc                                                                          >  1:918418/1‑149 (MQ=255)                                                                              ttccGCACAGCGTTACCGTAGCCTGCGGTATTTCGGGTAAGTGCTTCTTCTGGACTAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACg                                                                         <  1:776753/146‑1 (MQ=255)                                                                                 cGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTa                                                                      >  2:643457/1‑149 (MQ=255)                                                                                  gCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTaa                                                                     >  2:253502/1‑149 (MQ=255)                                                                                  gCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTaa                                                                     >  2:657300/1‑149 (MQ=255)                                                                                   cacaGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAAc                                                                    <  1:368384/149‑1 (MQ=255)                                                                                    acaGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGtt                                                                                                             <  1:786969/107‑1 (MQ=255)                                                                                    acaGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGtt                                                                                                             >  2:786969/1‑107 (MQ=255)                                                                                    acaGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTCACg                                                                   >  2:548221/1‑149 (MQ=255)                                                                                      aGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGtt                                                                 >  2:636962/1‑149 (MQ=255)                                                                                        cGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGc                                                               <  2:1094776/149‑1 (MQ=255)                                                                                          ttACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTc                                                             <  1:605711/149‑1 (MQ=255)                                                                                             ccGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAAg                                                          <  1:242040/149‑1 (MQ=255)                                                                                             ccGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATACGGCATGGCATTTTTAGTTGTGGTTGGCGTGTTTAAGCTGCAGGTTGGAAATCCCGTGACGTTAACGTTGCTTAAg                                                          >  1:36082/1‑149 (MQ=255)                                                                                              cGTCATCTGCCGTCTATCGGCACAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCAGGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGCAATCCCGTGACGGTAACGTTGCTCAAgg                                                         <  1:1568/149‑1 (MQ=255)                                                                                              cGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAAgg                                                         <  1:1064531/149‑1 (MQ=255)                                                                                              cGTCAGCTGCCGTATATCGGCAAAGTGATTCTGCCGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAAgg                                                         <  1:774075/149‑1 (MQ=255)                                                                                                tCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGATTGAGGTTGGAAATCCCGTGCCGGTAACGTTGCTCAACGGt                                                       >  2:569422/1‑149 (MQ=255)                                                                                                 cATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAAGGGtt                                                      >  1:68622/1‑149 (MQ=255)                                                                                                  aTCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGAAAGTGTGAAGTTGCCAGATGTGTTGCCTTCGGCATGGCATTTTGATTTGTGGTTGGCGTGTTGCAGCTTAAGGTTGAAAAGCCCGTGACGGTACCATTGCTCCAGGAttt                                                     >  2:953667/1‑149 (MQ=255)                                                                                                     tGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAAGGGTTTcgc                                                  >  1:414689/1‑149 (MQ=255)                                                                                                     tGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGACATGGCATTTTTATTTTTGGTTGTCATGTTTCAGCTTGAGGTTGGAAATCCAGTGAGGGTAATGTTGATCAAGTGTTTcgc                                                  >  2:411488/1‑149 (MQ=255)                                                                                                       ccGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCggcat                                                                                                                                >  1:955620/1‑69 (MQ=255)                                                                                                       ccGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCggcat                                                                                                                                <  2:955620/69‑1 (MQ=255)                                                                                                       ccGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGt                                                                                                              <  2:222789/87‑1 (MQ=255)                                                                                                       ccGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGt                                                                                                              >  1:222789/1‑87 (MQ=255)                                                                                                       ccGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAAGGGTTTCGCgg                                                >  1:515456/1‑149 (MQ=255)                                                                                                        gttagagcGGCCAAGTGCTTCTGCTGTCCTACGAAGTGTGAATTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTTACGGTAACGTTGCTCAAGGGTTTCGCGGt                                               <  1:468238/142‑1 (MQ=255)                                                                                                           atatTGGCAAAGTGATTCTGCTTGACGAGTAAGGGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGGGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAAGGGTTTCGCGGTtgg                                            <  1:480262/149‑1 (MQ=255)                                                                                                           atatCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCCGGATGGCGTGGTTATTTAAATTGTGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAAGGGTTTCGCGGAtgg                                            >  1:553509/1‑149 (MQ=255)                                                                                                             atCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAAGGGTTTCGCGGTtggt‑g                                         <  2:137353/149‑1 (MQ=255)                                                                                                                 gCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAAGGGTTTCGCGGTTGGT‑GGCgg                                     <  2:995355/149‑1 (MQ=255)                                                                                                                 gCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAAGGGTTTCGCGGTTGGT‑GGCgg                                     <  1:393235/149‑1 (MQ=255)                                                                                                                  cAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAAGGGTTTCGCGGTTGGT‑GGCGGt                                    <  1:780301/149‑1 (MQ=255)                                                                                                                   aaaGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGGTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAAGGGTTTCGCGGTTGGT‑GGCGGTa                                   >  1:42200/1‑149 (MQ=255)                                                                                                                   aaaGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAAGGGTTTCGCGGtta                                             <  2:485545/140‑2 (MQ=255)                                                                                                                   aaaGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAAGGGTTTCGCGGTtg                                             >  1:485545/1‑140 (MQ=255)                                                                                                                    aaGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGGAACGTTGCTCAAGGGTTTCGCGGTTGGG‑TGCGGTaa                                  >  1:251490/1‑149 (MQ=255)                                                                                                                          ttCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAAGGGTTTCGCGGTtggt                                           <  1:916454/135‑1 (MQ=255)                                                                                                                          ttCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAAGGGTTTCGCGGTtggt                                           >  2:916454/1‑135 (MQ=255)                                                                                                                               ctgGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGCTCCAGAAACTTTGCGCGGTTGGT‑GGCGGTAACATCCAGATCa                       <  1:846047/149‑1 (MQ=255)                                                                                                                                tgGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCCTTTTTCTTTATGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATTCCGTGACGGTAAAGTTGCTCAAGGGTTTCGCGGTTGGT‑GGCGGCACGATCTAGATCAc                      >  2:576322/1‑149 (MQ=255)                                                                                                                                tgGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAAGGGTTTCGCGGTTGGT‑GGCGGTAACATCCAGATCAc                      >  2:620548/1‑149 (MQ=255)                                                                                                                                 ggACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAAGGGTTTCGCGGTTGGT‑GGCGGTAACATCCAGATCACg                     <  1:1055001/149‑1 (MQ=255)                                                                                                                                   aCGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAAGGGTTTCGCGGTTGGT‑GGCGGTAACATCCAGATCACgca                   <  1:158043/149‑1 (MQ=255)                                                                                                                                    cgcgTAAGGGTGAAGTTGGCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGATAACCCGTGACGGTAACGGTGCTCAAGGGTTTCGCGGTTGGT‑GGCGGTAACATCCAGATCACgcag                  <  2:60375/146‑1 (MQ=255)                                                                                                                                     gAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAAGGGTTTCGCGGTTGGT‑GGCGGTAACATCCAGATCACgcagc                 >  2:1089104/1‑149 (MQ=255)                                                                                                                                       gTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAACGAATCC‑CATTTCGTGGGCGGTAACATCCAGATCACGCAGCaa               <  1:847003/149‑1 (MQ=255)                                                                                                                                        tAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAAGGGTTTCGCGGTTGGT‑GGCGGTAACATCCAGATCACGCAGCAAg              >  1:873587/1‑149 (MQ=255)                                                                                                                                              tgAAGTTGGCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAAGGGTTTCGCGGTTGGT‑GGCGGTAACATCCAGATCACGCAGCAAGCcgtcg        <  2:150208/149‑1 (MQ=255)                                                                                                                                              tgAAGTTGGCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAAGGGTTTCGCGGTTGGT‑GGCGGTAACATCCAGATCACGCAGCAAGCcgtcg        <  1:950664/149‑1 (MQ=255)                                                                                                                                              tgAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAAGGGTTTCGCGGTTGGT‑GGCGGTAACATCCAGATCACGCAGCAAGCcgtcg        >  2:772466/1‑149 (MQ=255)                                                                                                                                                    tGCCGGATGTGTTGCTTCCGGCAGGGCATTTTTATGTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAAGGGTTTCGCGGTTGGT‑GGCGGTAACATCCAGATCACGCAGCAAGCCGTCGTGAATg  <  2:123143/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      CGTCGTGAAGTGAACGTCCCGGTAGAATTTATCGGTTTCTCGATCCCGGATGAGTTTGTGGTGGGTTACGGCATTGATTACGCACAGCGTTACCGTCATCTGCCGTATATCGGCAAAGTGATTCTGCTGGACGAGTAAGTGTGAAGTTGCCGGATGTGTTGCATCCGGCATGGCATTTTTATTTGTGGTTGGCGTGTTTCAGCTTGAGGTTGGAAATCCCGTGACGGTAACGTTGCTCAAGGGTTTCGCGGTTGGT‑GGCGGTAACATCCAGATCACGCAGCAAGCCGTCGTGAATG  >  NC_000913_3_pae_tpiA/141830‑142125

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.