New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	3242994 =	61 (0.940)	5 (0.080)	5/274	8.6	8.0%	coding (321/1488 nt)	uxaA	altronate hydrolase
	?	NC_000913_3_pae_tpiA	3243029 =	56 (0.890)					coding (286/1488 nt)	uxaA	altronate hydrolase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAAAACGGTTCTGGATCTGCCGCGCGATGCCGTTGACACAGCCCACGGTTGGCAGGATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTGTGGGCGTGAACGTGAACACCTGCCGCAATATCCGCCAATGCATAACCAATCGGCAGGCCATATTTGATGACATTGGCCCCTTTTGCGATATCCGT  >  NC_000913_3_pae_tpiA/3242882‑3243176                                                                                                                                                    |                                                                                                                                                    gAAAACGGTTCTGGATCTGCCGCGCGATGCCGTTGACACAGCCCAAGGTTGGCAGGATGCACAGCTCATTAAGAAATCGGTCATCGCGGCTGGCGCGACGCTAGATCTGCCCTCCACTAGCGGCCGCTTGCGCACGCAAATCCTGaaaa                                                                                                                                                    >  2:669786/1‑149 (MQ=255)  aaaaCGGTTCTGGATCTGCCGCGCGATGCCGTTGACACAGCCCACGGTTGGCAGGATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAAt                                                                                                                                                   >  2:1129574/1‑149 (MQ=255)    aaCGGTTCTGGATCTGCCGCGCGATGCCGTTGACACAGCCCACGGTTGGCAGGATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCa                                                                                                                                                 <  1:411436/149‑1 (MQ=255)     aCGGTTCTGGATCTGCCGCGCGATGCCGGTGACACAGCCCACGGTTGGCAGGATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTCCCGCTTGCGCAGGCAGATCCTGAAAATCAg                                                                                                                                                <  1:1045336/149‑1 (MQ=255)      cGGTTCTGGATCTGCCGCGCGATGCCGGTGACACAGCTCACGGTTGGCAGGATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAgg                                                                                                                                               <  1:409975/149‑1 (MQ=255)                 cTGCCGCGCGAGTCCGTTGACACAGCCCACGGTTGGCAGGATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGAt                                                                                                                                    <  1:468825/149‑1 (MQ=255)                  tGCCGCGCGATGCCGTTGACACAGCCCACGGTTGGCAGGATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATa                                                                                                                                   <  1:1046813/149‑1 (MQ=255)                        gcgAGGCCGTTGACACAGCCCACGGTTGGCAGGATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATc                                                                                                                             <  2:164360/149‑1 (MQ=255)                          gATGCCGTTGACACAGCCCACGGTTGGCAGGATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCa                                                                                                                           <  2:952163/149‑1 (MQ=255)                              ccGTTGACACAGCCCACGGTTGGCAGGATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCCGATc                                                                                                                       >  1:902940/1‑149 (MQ=255)                               cGTTGGCACAGCCCACGGTTGGCAGGATCCACAGCTCATTACGCACCCCGACCTCGCCGTTAGCGCGACGATGATTGTGCACTTGACGATCTGGCGCTTGCGCATGCAGATCCTGAAAATCAGGTTGATAGCGATACTGTTCAAAATCg                                                                                                                      >  2:905302/1‑149 (MQ=255)                                   gACACAGGCCACGGTGGGTAGGCTCAATAGCACATTAAGCACCCCGATATCGCCGTTAGCGCGACGATAGATCTGCACCTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCGGGTTGATAGCGATACTGAGCCAGATCGCTCa                                                                                                                  <  2:314538/149‑1 (MQ=255)                                      acaGCCCACGTTTGCCAGGAGCCACAGCTTATTACGCTCTCCGACATCGCCTTTATCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCATATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGAt                                                                                                               <  2:932067/149‑1 (MQ=255)                                        aGCCCACGGTTGGCAGGATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGCTACTGATCCAGATCGCTCCGATTc                                                                                                             >  2:471105/1‑149 (MQ=255)                                           cgaCGGTTGGCAGGATCCACAGCTAATTACGCACCCCGACATAGCCGTTAGCGCGACGATAGATCTTCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTg                                                                                                          >  1:743024/3‑149 (MQ=255)                                           ccACGGTTGGCAGGATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTg                                                                                                          <  2:316257/149‑1 (MQ=255)                                             aCGGTTGGCAGGATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATTGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTgcg                                                                                                        >  2:1075533/1‑149 (MQ=255)                                                     cAGGATCCACAGCTCATTACGCACCCCGACATCGCCGTTCGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATtgt                                                                                                <  1:610951/149‑1 (MQ=255)                                                       ggATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGa                                                                                                                >  2:557555/1‑131 (MQ=255)                                                       ggATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGa                                                                                                                <  1:557555/131‑1 (MQ=255)                                                       ggATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTGTgg                                                                                              <  1:817950/149‑1 (MQ=255)                                                         aTCCACAGCTAATTAGCAACCCCCACAACGGCGGTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTGTGGGc                                                                                            <  2:749068/149‑1 (MQ=255)                                                          tCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTGTGGGcg                                                                                           >  1:620704/1‑149 (MQ=255)                                                             acaGCTCATTACGCACCCCGACAGCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTGTGGGcgtga                                                                                        >  2:723189/1‑149 (MQ=255)                                                              caGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTGTGGGcgtgaa                                                                                       >  1:287832/1‑149 (MQ=255)                                                               aGCTTATTACGCACCCCGACATCGCCGTTGGCGCGACGATAGATCTGCACTTCACGATCAGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTGTGGGcgtgaac                                                                                      <  2:30495/149‑1 (MQ=255)                                                               aGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTGTGGGcgtgaac                                                                                      <  2:743024/149‑1 (MQ=255)                                                                   cATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTGTGGGcgtgaacgtga                                                                                  <  1:1097476/149‑1 (MQ=255)                                                                       aCGCACCCCGACATCGCCGTTAGCGCGACGATTGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTGTGGGCGTGAACGTGAacac                                                                              <  1:1075533/149‑1 (MQ=255)                                                                       aCGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTGTGGGCGTGAACGTGAacac                                                                              <  1:333950/149‑1 (MQ=255)                                                                         gCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCATGCTCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTGTGGGCGTGAACGTGAACACCt                                                                            >  1:896044/1‑149 (MQ=255)                                                                            ccccGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGAt                                                                                                                        >  2:493188/1‑102 (MQ=255)                                                                            ccccGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGAt                                                                                                                        <  1:493188/102‑1 (MQ=255)                                                                              cccaCATCGCAGTGAGCGCGACGATAGATTTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTGTGGGCGTGAACGTGAACACCTGCCGc                                                                       <  2:325123/146‑1 (MQ=255)                                                                                   aTCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCGGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATGCGTGGGCGGAGTCTGGGCGTGAAGGTGAACACCTGCCGCAatat                                                                  <  2:245766/149‑1 (MQ=255)                                                                                    ccGCCGTTAGCGCGACGAGAGATCTGCACTTCACGATCTACCGCTTGAGCAGGCAGATCCTGAAAATCAGGTTGATAGCTATACTGATCCAGATCGCTCAGATTCCTGCGCGTATTGTGGGCGCGAACGTGAACACCTGCCGCAATATc                                                                 <  1:869364/148‑1 (MQ=255)                                                                                      gCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTGTGGGCGTGACCGTGAACACCTGCCGCCATACCCg                                                               >  2:37837/1‑149 (MQ=255)                                                                                       ctgTTAGCGCGACGATAGATCGGCAGTTCACGATCTGCCGTTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGTGATACTGATCCAGATCGCACAGATTCGTGCGCGTATTGTGGGCGTGAACGTGAACACCTGCCGCAATATTCGc                                                              <  2:478581/147‑1 (MQ=255)                                                                                       cgttgggcgcGGCTATAGATCGGCATCTCACGATCGGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTGTGGGCGTGAAGGGGAACTCCTGCCGCAATATCCGc                                                              <  2:674300/143‑1 (MQ=255)                                                                                                 gacgaTAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTGTGGGCGTGAACGTGAACACCTGCCGCAATATCCGCCAATGCATaa                                                    <  2:853480/149‑1 (MQ=255)                                                                                                          tCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTGTGGGCGTGAACGTGAACACCTGCCg                                                                        >  1:587242/1‑120 (MQ=255)                                                                                                          tCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTGTGGGCGTGAACGTGAACACCTGCCg                                                                        <  2:587242/120‑1 (MQ=255)                                                                                                          tCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTACGCGTATTGTGGGCGTGAACGTGAACACCTGCCGCAATATCCACCAATGCATAACCAATCGGc                                           >  1:1015860/1‑149 (MQ=255)                                                                                                            tGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGAGCGCTCAGATTCGTGCGCGTATTGTGGGCGTGGACGTGAACACCTGCCGCAACATCCGCCAACGCCTAACCAATCgcccg                                         >  1:1061298/1‑145 (MQ=255)                                                                                                                    aCGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTGTGGGCGTGAACGTGAACACCTGCCGCAATATCCGCCAATGCATAACCAATCGGCCGGCCATAtt                                 >  1:1097017/1‑149 (MQ=255)                                                                                                                    aCGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTGTGGGCGTGAACGTGAACACCTGCCGCAATATCCGCCAATGCATAACCAATCGGCAGGCCATAtt                                 <  1:105997/149‑1 (MQ=255)                                                                                                                           gCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCACAGATTCGTGCGCGTATTGTGGGCGTGAACGTGAACACCTGCCGCAATATCCGCCAATGCATAACCAATCGGCAGGCCATATTTGATGAc                          >  1:1075636/1‑149 (MQ=255)                                                                                                                             cGCTTGCGCAGGCAGGTCCTGAAAATCAGGTTGATAGGGATACTGAGCCAGATCGCTCAGATTCGTGCGCGTATTGTTGGCGTGAACGTGAACACCTGCCGCAATATCCGCCAATGCATCACCCATCGGCAGGCCATCTTTGATGACAt                        <  2:376446/149‑1 (MQ=255)                                                                                                                              gCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGCTCCAGATCGCGCAGATTCGTGCGGGTATTGTAAGCGTGAACGTAAAAACCTGCCGCAATATCCGCGAATGCATAACCAATCGGAAGGCCATATTTGATGACAtt                       >  2:386840/1‑149 (MQ=255)                                                                                                                              gCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTAATCCAGATCGCTCAGATTCGTGCGCGTATTGTGGCCGTGAACGTGAACACCTGCCGAAATATCCGCCAATGGATAACCAATCGGCAGGCCATATTTGAGGACAtt                       >  2:386820/1‑149 (MQ=255)                                                                                                                                 ggcgcAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTGTGGGCGTGAACGTGAACACCTGCCGCAATATCCGCCAATGCATAACCAATCGGCAGGCCATATTTGATGACATTGGc                    <  1:1039620/148‑1 (MQ=255)                                                                                                                                    gcaggcagATCCTGAAAATCAGGTTGATAGCGATACTGATCCAAATCGCTCAGATTCGTCCGCGTATTGTGGGCGTGAACGTGAACACCTGCCGCAATATCCGCCAATGCATAACCAATCGGCAGGCCATATTTGATGACATTGGcccc                 >  1:444080/1‑149 (MQ=255)                                                                                                                                      aggcagATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTGTGGGCGTGAACGTGAACACCTGCCGCAATATCCGCCAATGCATAACCAATCGGCAGGCCATATTTGATGACATTGGCCCCtt               <  1:471105/149‑1 (MQ=255)                                                                                                                                        gcagATCGTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTGTGGGCGTGAACGTGAACACCTGCCGCAATATCCGCCAATGCATAACCAATCGGCAGGCCATATTTGATGACATTGGCCCCtttt             <  2:356925/149‑1 (MQ=255)                                                                                                                                         cagATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTTTGGGCGTGAACGTGAACACCTGCCGCAATATCCGCCAATGCATAACCAATCGGCAGGCCATATTTGATGACATTGGCCCCTTTTg            <  1:735908/149‑1 (MQ=255)                                                                                                                                         cagATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTGTGGGCGTGAACGTGAACACCTGCCGCAATATCCGCCAATGCATAACCAATCGGCAGGCCATATTTGATGACATTGGCCCCTTTTg            <  2:76720/149‑1 (MQ=255)                                                                                                                                            aTCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTGTGGGCGTGAACGTGAACACCTGCCGCAATATCCGCCAATGCATAACCAATCGGCAGGCCATATTTGATGACATTGGCCCCTTTTGCGa         <  2:802867/149‑1 (MQ=255)                                                                                                                                                   aaaTCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTGTGGGCGTGAACGTGAACACCTGCCGCAATATCCGCCAATGCATAACCAATCGGCAGGCCATATTTGATGACATTGGCCCCTTTTGCGATATCCGt  <  2:617902/149‑1 (MQ=255)                                                                                                                                                   aaaTCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTGTGGGCGTGAACGTGAACACCTGCCGCAATAGCCGCCAATGCATAACCAATCGGCAGGCCATATTTGATGACATTGGCCCCTTTTGCGATATCCGt  <  2:620704/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GAAAACGGTTCTGGATCTGCCGCGCGATGCCGTTGACACAGCCCACGGTTGGCAGGATCCACAGCTCATTACGCACCCCGACATCGCCGTTAGCGCGACGATAGATCTGCACTTCACGATCTGCCGCTTGCGCAGGCAGATCCTGAAAATCAGGTTGATAGCGATACTGATCCAGATCGCTCAGATTCGTGCGCGTATTGTGGGCGTGAACGTGAACACCTGCCGCAATATCCGCCAATGCATAACCAATCGGCAGGCCATATTTGATGACATTGGCCCCTTTTGCGATATCCGT  >  NC_000913_3_pae_tpiA/3242882‑3243176

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.