New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA 4121531 =117 (1.960)5 (0.090) 5/276 7.8 4.3% coding (133/1332 nt) hslU molecular chaperone and ATPase component of HslUV protease
?NC_000913_3_pae_tpiA 4121551 = 113 (1.990)coding (113/1332 nt) hslU molecular chaperone and ATPase component of HslUV protease
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 118 total aligned reads displayed.

ATTTGGTCGCTTCAACTTTGATGAACGGCGCATTCGCCAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGAT  >  NC_000913_3_pae_tpiA/4121408‑4121699
                                                                                                                                               |                                                                                                                                                      
aTTTGGTCGCTTCAACTTTAACTAACGCCGCAAACGCCAGCTTAGCCAGTCGACGGGCGATTTCAGTTTTACCGACACCGGTCCGACCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGa                                                                                                                                                   <  1:522798/149‑1 (MQ=255)
  tttgTCGCTTCAACTTTGATGAACGGCGCATTCGCCAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACg                                                                                                                                                 <  1:194508/146‑1 (MQ=255)
          ttCAACTTTGATGAACGGCGCATTCGCCAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGt                                                                                                                                         >  1:707656/1‑149 (MQ=255)
          ttCAACTTTGATGAACGGCGCATTCGCCAGCTTAGACAGACGACAGGCGATTTAAGTTTTCCCAAAACCGGTCGGGCCCAACCTCAGGATATTTTACGGGGTCACTCCATGGCACAGCCCTACCTCGAGCTGCATCCGCCGCCAGCTGt                                                                                                                                         >  2:291478/1‑149 (MQ=255)
          ttCAAATTTGATGAACGGCTCATTCGCCAGCTTATCCAGACGACGGGCGGTTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGCCGCCACCGGt                                                                                                                                         >  2:879234/1‑149 (MQ=255)
             aaCTTGGATGAACGGCGCATTCGCTAGCGTAGCCAGACGAAGGGCGATTTCAGTTTTACCGACACCGGTCGGTCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑Ac                                                                                                                                    <  2:890669/149‑1 (MQ=255)
               cTTTGATGAACGGCGCATTCGCCAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGc                                                                                                                                  >  1:613122/1‑149 (MQ=255)
               cTTTGATGAACGGCGCATTCGCCAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGc                                                                                                                                  >  2:263077/1‑149 (MQ=255)
                tttGATGAACGGCGCATTCGCCAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGAGGACAGCGGTT‑‑ACGCa                                                                                                                                 >  1:154090/1‑149 (MQ=255)
                tttGATGAACGGCGCATTCGCCAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGACGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCa                                                                                                                                 >  1:442134/1‑149 (MQ=255)
                  tgaggaACGGCCTATTCGCCAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCaga                                                                                                                               <  2:100190/149‑1 (MQ=255)
                      gaACGGCGCATTCGCCAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACAACGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGATGAGCTTTATGCGACGCCAGCGGTT‑‑ACGCAGAGCag                                                                                                                           >  1:92913/1‑148 (MQ=255)
                       taCGGCTCATGCGCGAGCTTCGCCAGACGACGGCGGATTTCTGCTGTCCTCACACCGTGAGGGGTTGTGATCAGGTTATTGTTCTGGGTCACTTCATGGCGCAGTTCTTCTTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCaag                                                                                                                          <  2:317468/148‑2 (MQ=255)
                             gcATTCGCCAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGTCGCAGCTCTTCGTTGAACTGCATGCCACGCCAGCGGTT‑‑ACGCAGAGCAATCGCcac                                                                                                                    >  1:200641/1‑149 (MQ=255)
                               aTTCGCCAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCTACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAg                                                                                                                  >  2:845504/1‑149 (MQ=255)
                                ttCGCCAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGa                                                                                                                 >  1:7106/1‑149 (MQ=255)
                                ttCGCCAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCAATAGCGGATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTAAGCTGCATGGGACGCGAGCGGTT‑‑ACTGAGAGCAATCGCcacaaa                                                                                                                 >  1:721460/1‑147 (MQ=255)
                                   gCCAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACg                                                                                                              >  1:860206/1‑149 (MQ=255)
                                    ccAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGc                                                                                                             >  1:757584/1‑149 (MQ=255)
                                         ttAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGc                                                                                                                                                     >  2:942559/1‑106 (MQ=255)
                                            gCCAGACGACGTGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGtt                                                                                                     <  1:844941/149‑1 (MQ=255)
                                            gCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGtt                                                                                                     <  1:288711/149‑1 (MQ=255)
                                             cgagagGACGTGCTATTTCAGTTGTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTg                                                                                                    <  2:236332/147‑1 (MQ=255)
                                               aGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTc                                                                                                  <  1:658809/149‑1 (MQ=255)
                                                gacgacGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCCGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTcc                                                                                                 >  2:387436/1‑149 (MQ=255)
                                                gacgacGGGCGATATCAGTTTTACCGACACCGGTCGAGCCGATCATCAGGATCTTTTTCGGGGTCCCTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACCCCAGCGCTT‑‑ACGCAGAGCAATCGCCACAGAACGCCTCGCGtcgccc                                                                                                 >  2:386996/1‑144 (MQ=255)
                                                 acgacgGGCGATTTCAGTTTTACCTACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCt                                                                                                <  1:845504/149‑1 (MQ=255)
                                                  cgacgGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTg                                                                                               <  2:561559/149‑1 (MQ=255)
                                                   gacgGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCAACAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTgg                                                                                              <  2:121322/149‑1 (MQ=255)
                                                    acgGGCGATTTCCGCTTTACCGACACGGGTCGCGTCGATCCTGAGGAGATTGTTCGGGGTCACTTCATGGCGCAGTTCTTCGTTGAGCTGCAGGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGc                                                                                             <  2:726000/149‑1 (MQ=255)
                                                    acgGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATTCGGATATTTTTAGGGGTCTCTGTAGGGCGCAGCTCTTCGTTGAGCTGCATGTGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGc                                                                                             <  2:114633/149‑1 (MQ=255)
                                                      gggCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGGAGATCGCCAGCCCATCGGTT‑‑ACGCAGAGCAATCGCCAAAGAAAGCTTGGCGTTGTCCTGGCCg                                                                                           >  1:240793/1‑149 (MQ=255)
                                                           aTTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCgatgat                                                                                      <  2:154090/149‑1 (MQ=255)
                                                            tttCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCGCTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGatgatg                                                                                     >  1:689888/1‑149 (MQ=255)
                                                            tttCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGatgatg                                                                                     >  1:890459/1‑149 (MQ=255)
                                                              tCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAAAACGCTTGGCGTTGTCCTGACCGATGAtgtc                                                                                   >  2:513969/1‑148 (MQ=255)
                                                               cAGTTTTACCGACTCCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGAGCAGCCATCTGTAGAACGC‑GA‑CAGTCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGc                                                                                  <  1:1030085/149‑1 (MQ=255)
                                                               cAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCTGCGGGT‑‑ACTGATAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGc                                                                                  <  1:203080/149‑1 (MQ=255)
                                                               cAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGc                                                                                  <  2:767435/149‑1 (MQ=255)
                                                                  ttttACCGACAGCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTa                                                                               <  2:344535/149‑1 (MQ=255)
                                                                  ttttACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGACAGCCGCG‑‑ACGCTGAGCAATAGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGAtgtgtgta                                                                               >  1:240198/1‑145 (MQ=255)
                                                                    ttACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGATTGGCGTTGTCCTGGCCGATGATGTACTTATc                                                                             >  1:228754/1‑149 (MQ=255)
                                                                       ccGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCATCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCat                                                                          >  1:219026/1‑148 (MQ=255)
                                                                        cGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCATTGAGCTGCATGCGACGCCCGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCCGt                                                                         >  2:648964/1‑149 (MQ=255)
                                                                         gACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGtt                                                                        <  2:822411/149‑1 (MQ=255)
                                                                         gACACCGGCCGGGCCGATCATCAGGATATTTTTCGCGTTCATTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGTCACAGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGtt                                                                        <  1:23418/149‑1 (MQ=255)
                                                                               ggTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGa                                                                  >  1:884464/1‑149 (MQ=255)
                                                                                  cGGGCCGATCAGCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGa                                                               <  2:757584/149‑1 (MQ=255)
                                                                                     gCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGc                                                                                             >  1:633763/1‑116 (MQ=255)
                                                                                     gCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGc                                                                                             <  2:633763/116‑1 (MQ=255)
                                                                                         atcatcAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCAt                                                                                                                                                       <  2:924033/56‑1 (MQ=255)
                                                                                         atcatcAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCAt                                                                                                                                                       >  1:924033/1‑56 (MQ=255)
                                                                                          tcatccGGAGTTTTTGCCTGGTCACTTGATGGCGCAGCTCTTCGTTGGGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGGAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGt                                                       <  2:423378/149‑1 (MQ=255)
                                                                                          tcatcaGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGt                                                       <  2:614113/149‑1 (MQ=255)
                                                                                            atcaGGATATTTTTCGGTGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTgg                                                     <  1:374318/149‑1 (MQ=255)
                                                                                            atcaGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTgg                                                     >  2:325813/1‑149 (MQ=255)
                                                                                             tcaGGATATTTTTCGGGGTCACTTCATTGCGCAGTTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTggg                                                    <  1:106244/149‑1 (MQ=255)
                                                                                             tcaGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTggg                                                    <  1:263077/149‑1 (MQ=255)
                                                                                              caGGATATTTTTCGGGGTCACTTCATACCGCAGCTCTTCGTTGAGCTGCATGCGACGCCATCGGTT‑‑ACGCAGAGCAATCGGCACAGAACGCTGGCCGTTGTCCTGGCCGATGATGTGCGTAACCAGTTCGCTGACGATTTCGAGTgggg                                                   >  2:669225/1‑149 (MQ=255)
                                                                                                 gATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTgg                                                                                              >  1:279579/1‑103 (MQ=255)
                                                                                                 gATATTTTTCGGGGTCACTTCATGGCGCAGCCCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCa                                                >  1:658626/1‑149 (MQ=255)
                                                                                                  atatTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGCCGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCAt                                               >  2:205332/1‑149 (MQ=255)
                                                                                                   tatTTTTCGGGTTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCAtt                                              <  1:38734/149‑1 (MQ=255)
                                                                                                    atTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCAttt                                             <  2:183467/149‑1 (MQ=255)
                                                                                                      ttttCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCATTTCa                                           <  1:727670/149‑1 (MQ=255)
                                                                                                        ttCGGGGTCACTTCATGGCCCAGCCCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGAGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCATTTCAGa                                         <  2:939674/149‑1 (MQ=255)
                                                                                                        tgcGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTATCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCATTTCAGa                                         <  1:166917/147‑1 (MQ=255)
                                                                                                         tCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCATTTCAGAc                                        <  1:859610/149‑1 (MQ=255)
                                                                                                            gggTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGAGGATGTGCTTATCCAGTTCGCTGACGATTTCGAGTGGGGTCATTTCAGACATg                                     >  2:1030803/1‑149 (MQ=255)
                                                                                                             ggTCACTTCATGGCGCAGCTCTTCGTTGGCCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCATTTCAGACATgg                                    <  1:513969/149‑1 (MQ=255)
                                                                                                             ggTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCATTTCAGACATgg                                    <  1:780496/149‑1 (MQ=255)
                                                                                                             ggTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCATTTCAGACATgg                                    <  1:157711/149‑1 (MQ=255)
                                                                                                               tCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCTGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCATTTCAGACATGGga                                  <  1:9828/149‑1 (MQ=255)
                                                                                                               tCACTTCATGGCGCAGCCCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGGCCTGGCCGATGATGTGCTTATACAGTTCGCTGACGATTTCGCGTGGGGTCATTTCAGACATGGga                                  <  1:1032518/149‑1 (MQ=255)
                                                                                                                 aCTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCATTTCAGACATGGgaga                                >  1:410262/1‑149 (MQ=255)
                                                                                                                   ttCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCCGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATAATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCATTTCAGACATGGGAGAtg                              >  1:5074/1‑148 (MQ=255)
                                                                                                                   ttCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCCCCGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCACGTGGGGTCATTTCAGACATGGGAGATc                              >  1:504755/1‑149 (MQ=255)
                                                                                                                   ttCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCgatga                                                                                       >  2:529710/1‑92 (MQ=255)
                                                                                                                   ttCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCgatga                                                                                       <  1:529710/92‑1 (MQ=255)
                                                                                                                   ttCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCCTTTCAGCCATGGGAGATc                              >  2:416837/1‑149 (MQ=255)
                                                                                                                   ttCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCATTTCAGACATGGGAGATc                              >  1:822952/1‑149 (MQ=255)
                                                                                                                   ttCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCATTTCAGACATGGGAGATc                              <  1:693725/149‑1 (MQ=255)
                                                                                                                   ttCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACACCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCCTTTCGGACATGGgaggtg                              >  2:441495/1‑146 (MQ=255)
                                                                                                                    tCATGGCTCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCATTTCAGACATGGGAGATcc                             <  1:325813/149‑1 (MQ=255)
                                                                                                                      aTGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCATTTCAGACATGGGAGATCCtt                           <  2:860206/149‑1 (MQ=255)
                                                                                                                           gcAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAAAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCATTTCAGACATGGGAGATCCTTACGCt                      >  1:606626/1‑149 (MQ=255)
                                                                                                                               ctctTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCACTCGCCCCCCACCTCTTTGCGTTGTCCTGGCCGATGTTGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCATTTCAGACATGGGAGATCCTTACGCTTTGt                  <  1:290936/149‑1 (MQ=255)
                                                                                                                                 ctTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCTGTTCGCTGACGATTTCGCGTGGGGTCATTTCa                                           >  2:965327/1‑122 (MQ=255)
                                                                                                                                 ctTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAg                <  1:446689/149‑1 (MQ=255)
                                                                                                                                 ctTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGAGTGGGGTCATTTCAGCCATGGGCACTCCTTACGCTTTGTAg                >  2:684698/1‑149 (MQ=255)
                                                                                                                                 ctTCGTTGAGCTGCATGCGACGCAAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCATTTCa                                           <  1:965327/122‑1 (MQ=255)
                                                                                                                                  gtCGGTGAGCTGCATGCGGCGCCAGCGGGT‑‑ACGCAGAGCAATCGCCACAGAACGATTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCATTTCATACATGGGAGATCCTTACGCTTTGTAGc               <  2:89294/148‑1 (MQ=255)
                                                                                                                                     gTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGAGTGGGGTCATTTCAGACATGGGAGATACTTACGCTTTGTAGCTTa            >  1:114047/1‑149 (MQ=255)
                                                                                                                                      ttGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTaa           <  2:938000/149‑1 (MQ=255)
                                                                                                                                      ttGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTGaa           >  1:560269/1‑149 (MQ=255)
                                                                                                                                      ttGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGAATTCGCGTGGGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTaa           >  1:175944/1‑149 (MQ=255)
                                                                                                                                            gcaaTGCGTCGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAAttcttc     <  2:620836/146‑1 (MQ=255)
                                                                                                                                              cATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGCTGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCATTTCAAACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGa   >  1:259432/1‑149 (MQ=255)
                                                                                                                                              cATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTAGCCGATGATGTGCTTATCCAGTTCGCTGACTATTTCGCGTGGGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGa   <  2:613122/149‑1 (MQ=255)
                                                                                                                                               aTGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACATAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGAt  <  1:247011/149‑1 (MQ=255)
                                                                                                                                               |                                                                                                                                                      
ATTTGGTCGCTTCAACTTTGATGAACGGCGCATTCGCCAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTT‑‑ACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTTATCCAGTTCGCTGACGATTTCGCGTGGGGTCATTTCAGACATGGGAGATCCTTACGCTTTGTAGCTTAATTCTTCGAT  >  NC_000913_3_pae_tpiA/4121408‑4121699

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.