New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 3056971	44 (1.120)	5 (0.140)	5/268	4.7	10.8%	noncoding (123/140 nt)	sibC	sRNA antisense regulator of toxic IbsC protein
	?	NC_000913_3_pae_tpiA	= 3056979	41 (1.110)					noncoding (131/140 nt)	sibC	sRNA antisense regulator of toxic IbsC protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTTTGACCTAATTTAGTGAGTAAGGGTAAGGGAGGATTGCTCCTCCCCTGAGACTGACTGTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGA  >  NC_000913_3_pae_tpiA/3056830‑3057118                                                                                                                                              |                                                                                                                                                    cTTTGACCTAATTTAGTGAGTAAGGGTAAGGGAGGATTGCTCCTCCCCTGAGACTGACTGTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATAAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCgg                                                                                                                                              <  2:652270/149‑1 (MQ=255)      ccttAATTTAGTTAGTAATGGTAAGGGTGGCTTGCTACTCCCGTGCGACTGACTGTTGATAAGCTCTGAAACTTATGCGTAACAGTACAATCAGTATTATGACAAGTCGCATCAGAACTCTTCTCCTTCAAGTCCTCGCTTCGGTGAgg                                                                                                                                         <  2:49991/146‑1 (MQ=255)          aaTTTATTGAGTAACGGTAAGGGAGGATTGCTCCTCCCCTGAGACTGACTGTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCtt                                                                                                                                     <  1:413900/149‑1 (MQ=255)              tAGTGAGTAAGGGTAAGGGAGGATTGCTCCTCCCCTGAGACTGACTGTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTAcc                                                                                                                                 <  2:96489/149‑1 (MQ=255)               aGTGAGTAAGGGTAAGGGAGGATTGCTCCTCCCCTGAGACTGACTGTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCg                                                                                                                                >  1:53014/1‑149 (MQ=255)                     taagggtaagggGGGACTGCTCCTCCCCTGAGACTGACTGTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACGCTTCTCCTTCAGGACCCCGCGTCGGTGAGGGCTTTAACGTTACAg                                                                                                                          >  2:41798/1‑149 (MQ=255)                           taagggAGGATTGCTCCTCCCCTGAGACTGACTGTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCAt                                                                                                                    <  1:429952/149‑1 (MQ=255)                              gggAGGATTGCTCCTCCCCTGAGACTGACTGTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGa                                                                                                                                           <  2:481134/123‑1 (MQ=255)                              gggAGGATTGCTCCTCCCCTGAGACTGACTGTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGa                                                                                                                                           >  1:481134/1‑123 (MQ=255)                               ggaggaTTGCTCCTCCCCTGAGACTGACTGTTAATAAGCGCTGAACCTTGTGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCTAGCCCTCGCTTCCGTGAGGGCTTTACGGTTACAACCCAAtgctg                                                                                                                >  2:3894/1‑149 (MQ=255)                               ggaggaTTGCTCCTCCCCTGAGACTGACTGATAAGAAGCGCTGATGCTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCAggctc                                                                                                                >  1:137957/1‑148 (MQ=255)                                 aggaTTGCTCCTCCCCTGAGACTGACTGTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGctgcc                                                                                                              <  1:282286/149‑1 (MQ=255)                                            tccCCTGAGACTGACTGTTAATAAGCGCTGAAACTTATGATTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTa                                                                                                   <  2:649092/149‑1 (MQ=255)                                                  gagaCTGACTGTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATccc                                                                                             <  2:53014/149‑1 (MQ=255)                                                        gactgTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCCTCGTAAATCCACAttca                                                                                       >  2:634926/1‑147 (MQ=255)                                                         actgTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTcac                                                                                                                                                   >  1:466329/1‑86 (MQ=255)                                                         actgTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTcac                                                                                                                                                   <  2:466329/88‑3 (MQ=255)                                                          ctgTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATtaaac                                                                                     <  2:10043/149‑2 (MQ=255)                                                             ttAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATtaaataaa                                                                                  >  1:283045/1‑149 (MQ=255)                                                             ttAATAAGCGCTGAAACTTATGAGGAACAGTACAATCAATATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATtaaataaa                                                                                  <  2:493714/149‑1 (MQ=255)                                                                ataaGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCCTCGTAAATCCCCATTAAATAAacac                                                                               <  1:621582/149‑1 (MQ=255)                                                                        tGAAACTTATGAGTAACAGTACAATCAGTATGATGACAGGTCGCATAATAAACCTTCTCCTTCAAGCCATCGCTTCGGTGGGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGGAAATCCCCATTAAATAACCACAAccactt                                                                       >  2:274534/1‑144 (MQ=255)                                                                               tATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGa                                                                >  1:437339/1‑149 (MQ=255)                                                                                aTGAGTAACAGTACAATCAGTATGATGACAAGTCACATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATGGCTCTGAc                                                               >  1:330298/1‑149 (MQ=255)                                                                                     tAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTGa                                                          >  1:281298/1‑149 (MQ=255)                                                                                      aaCAGTCCAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGTTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAACTCCTCATTAAATAAACACATCGCCTTGATCTGTCTTTGat                                                         <  2:166979/149‑1 (MQ=255)                                                                                      aaCAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCCTCGTAAATCCCCATTAAATAAACACAACGCCTTGATTTGCCTTTGat                                                         >  2:225476/1‑149 (MQ=255)                                                                                           tACAATCCGTCTGATGACAAGTCGCATCATAACCCTTCTACATCAAGCCCTCGCTTCAGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATACACCCAACCCCTAGATCTGACTATGatttctt                                                    >  2:635695/1‑149 (MQ=255)                                                                                               aTCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTTATTTATTTTCt                                                >  2:21455/1‑149 (MQ=255)                                                                                                    tATCATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTGATTTATTTTCTGGAGc                                           <  1:137696/149‑1 (MQ=255)                                                                                                      tgatgaCAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACACATTGATCTGACTTTGATTTATTTTCTGGAGCAg                                         >  1:606354/1‑149 (MQ=255)                                                                                                       gatgaCAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGa                                        <  2:351482/149‑1 (MQ=255)                                                                                                       gatgaCAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGa                                        <  1:409451/149‑1 (MQ=255)                                                                                                                     tcatAACCCTTCTCCTTCAAGCCCTCGCTTCGGAGAGGGCTTTCCCGCTGCAACCCCATGCTGCCATGCCAACGTAAATCCCCATTAAAT‑AACACAACGAATTGGTCGGACTCTGATTTATTTTTTTGGGCAGACTCGCACGGTAGCAt                         >  2:634360/1‑149 (MQ=255)                                                                                                                               tctcCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAAcgc                <  1:466843/149‑1 (MQ=255)                                                                                                                                ctcCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGAAAAGTAGAATGCGCAAcgcg               >  2:283991/1‑149 (MQ=255)                                                                                                                                    ttCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAGTAAACACAACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAAAGCGGcga           >  2:133728/1‑147 (MQ=255)                                                                                                                                    ttCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGcca           >  2:551261/1‑147 (MQ=255)                                                                                                                                    ttCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCaa           >  2:397781/1‑149 (MQ=255)                                                                                                                                    ttCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCaa           >  1:270524/1‑149 (MQ=255)                                                                                                                                    ttCAAGCCCTCGCTCCGGTGAGGGCTTTACCGTTACAGCCCCGTCCTGCCTTGCGCTCGTAAATCGCCATTAAATAAACACACCGCATTGCTCTCCCTTTGCTTTGTTTTCTGGGGTAGACTCGCCACACAGACTGCGCCACGCGGcga           >  2:691762/1‑147 (MQ=255)                                                                                                                                        aGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGgt       >  2:450753/1‑149 (MQ=255)                                                                                                                                        aGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGgt       <  2:281298/149‑1 (MQ=255)                                                                                                                                           ccTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCGGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGggtg    >  1:436040/1‑149 (MQ=255)                                                                                                                                            cTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTgg   >  1:575878/1‑149 (MQ=255)                                                                                                                                             tCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAGACACAACGCATTGATCTGACTTTGATTTGTTTTCTAGAGCAGACTCGCAAAGTAGAATGCGCAAAGCGGCAACGGTGTGga  >  2:195797/1‑149 (MQ=255)                                                                                                                                              |                                                                                                                                                    CTTTGACCTAATTTAGTGAGTAAGGGTAAGGGAGGATTGCTCCTCCCCTGAGACTGACTGTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGA  >  NC_000913_3_pae_tpiA/3056830‑3057118

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.