New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 3056971	44 (1.120)	5 (0.140)	5/268	4.7	10.8%	noncoding (123/140 nt)	sibC	sRNA antisense regulator of toxic IbsC protein
	?	NC_000913_3_pae_tpiA	= 3056979	41 (1.110)					noncoding (131/140 nt)	sibC	sRNA antisense regulator of toxic IbsC protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACCTAATTTAGTGAGTAAGGGTAAGGGAGGATTGCTCCTCCCCTGAGACTGACTGTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGA  >  NC_000913_3_pae_tpiA/3056835‑3057125                                                                                                                                                 |                                                                                                                                                   ccttAATTTAGTTAGTAATGGTAAGGGTGGCTTGCTACTCCCGTGCGACTGACTGTTGATAAGCTCTGAAACTTATGCGTAACAGTACAATCAGTATTATGACAAGTCGCATCAGAACTCTTCTCCTTCAAGTCCTCGCTTCGGTGAgg                                                                                                                                                <  2:49991/146‑1 (MQ=255)     aaTTTATTGAGTAACGGTAAGGGAGGATTGCTCCTCCCCTGAGACTGACTGTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCtt                                                                                                                                            <  1:413900/149‑1 (MQ=255)         tAGTGAGTAAGGGTAAGGGAGGATTGCTCCTCCCCTGAGACTGACTGTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTAcc                                                                                                                                        <  2:96489/149‑1 (MQ=255)          aGTGAGTAAGGGTAAGGGAGGATTGCTCCTCCCCTGAGACTGACTGTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCg                                                                                                                                       >  1:53014/1‑149 (MQ=255)                taagggtaagggGGGACTGCTCCTCCCCTGAGACTGACTGTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACGCTTCTCCTTCAGGACCCCGCGTCGGTGAGGGCTTTAACGTTACAg                                                                                                                                 >  2:41798/1‑149 (MQ=255)                      taagggAGGATTGCTCCTCCCCTGAGACTGACTGTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCAt                                                                                                                           <  1:429952/149‑1 (MQ=255)                         gggAGGATTGCTCCTCCCCTGAGACTGACTGTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGa                                                                                                                                                  <  2:481134/123‑1 (MQ=255)                         gggAGGATTGCTCCTCCCCTGAGACTGACTGTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGa                                                                                                                                                  >  1:481134/1‑123 (MQ=255)                          ggaggaTTGCTCCTCCCCTGAGACTGACTGTTAATAAGCGCTGAACCTTGTGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCTAGCCCTCGCTTCCGTGAGGGCTTTACGGTTACAACCCAAtgctg                                                                                                                       >  2:3894/1‑149 (MQ=255)                          ggaggaTTGCTCCTCCCCTGAGACTGACTGATAAGAAGCGCTGATGCTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCAggctc                                                                                                                       >  1:137957/1‑148 (MQ=255)                            aggaTTGCTCCTCCCCTGAGACTGACTGTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGctgcc                                                                                                                     <  1:282286/149‑1 (MQ=255)                                       tccCCTGAGACTGACTGTTAATAAGCGCTGAAACTTATGATTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTa                                                                                                          <  2:649092/149‑1 (MQ=255)                                             gagaCTGACTGTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATccc                                                                                                    <  2:53014/149‑1 (MQ=255)                                                   gactgTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCCTCGTAAATCCACAttca                                                                                              >  2:634926/1‑147 (MQ=255)                                                     ctgTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATtaaac                                                                                            <  2:10043/149‑2 (MQ=255)                                                        ttAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATtaaataaa                                                                                         >  1:283045/1‑149 (MQ=255)                                                        ttAATAAGCGCTGAAACTTATGAGGAACAGTACAATCAATATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATtaaataaa                                                                                         <  2:493714/149‑1 (MQ=255)                                                           ataaGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCCTCGTAAATCCCCATTAAATAAacac                                                                                      <  1:621582/149‑1 (MQ=255)                                                                   tGAAACTTATGAGTAACAGTACAATCAGTATGATGACAGGTCGCATAATAAACCTTCTCCTTCAAGCCATCGCTTCGGTGGGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGGAAATCCCCATTAAATAACCACAAccactt                                                                              >  2:274534/1‑144 (MQ=255)                                                                          tATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGa                                                                       >  1:437339/1‑149 (MQ=255)                                                                           aTGAGTAACAGTACAATCAGTATGATGACAAGTCACATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATGGCTCTGAc                                                                      >  1:330298/1‑149 (MQ=255)                                                                                tAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTGa                                                                 >  1:281298/1‑149 (MQ=255)                                                                                 aaCAGTCCAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGTTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAACTCCTCATTAAATAAACACATCGCCTTGATCTGTCTTTGat                                                                <  2:166979/149‑1 (MQ=255)                                                                                 aaCAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCCTCGTAAATCCCCATTAAATAAACACAACGCCTTGATTTGCCTTTGat                                                                >  2:225476/1‑149 (MQ=255)                                                                                      tACAATCCGTCTGATGACAAGTCGCATCATAACCCTTCTACATCAAGCCCTCGCTTCAGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATACACCCAACCCCTAGATCTGACTATGatttctt                                                           >  2:635695/1‑149 (MQ=255)                                                                                          aTCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTTATTTATTTTCt                                                       >  2:21455/1‑149 (MQ=255)                                                                                               tATCATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTGATTTATTTTCTGGAGc                                                  <  1:137696/149‑1 (MQ=255)                                                                                                 tgatgaCAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACACATTGATCTGACTTTGATTTATTTTCTGGAGCAg                                                >  1:606354/1‑149 (MQ=255)                                                                                                  gatgaCAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGa                                               <  2:351482/149‑1 (MQ=255)                                                                                                  gatgaCAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGa                                               <  1:409451/149‑1 (MQ=255)                                                                                                                tcatAACCCTTCTCCTTCAAGCCCTCGCTTCGGAGAGGGCTTTCCCGCTGCAACCCCATGCTGCCATGCCAACGTAAATCCCCATTAAAT‑AACACAACGAATTGGTCGGACTCTGATTTATTTTTTTGGGCAGACTCGCACGGTAGCAt                                >  2:634360/1‑149 (MQ=255)                                                                                                                          tctcCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAAcgc                       <  1:466843/149‑1 (MQ=255)                                                                                                                           ctcCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGAAAAGTAGAATGCGCAAcgcg                      >  2:283991/1‑149 (MQ=255)                                                                                                                               ttCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAGTAAACACAACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAAAGCGGcga                  >  2:133728/1‑147 (MQ=255)                                                                                                                               ttCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGcca                  >  2:551261/1‑147 (MQ=255)                                                                                                                               ttCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCaa                  >  1:270524/1‑149 (MQ=255)                                                                                                                               ttCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCaa                  >  2:397781/1‑149 (MQ=255)                                                                                                                               ttCAAGCCCTCGCTCCGGTGAGGGCTTTACCGTTACAGCCCCGTCCTGCCTTGCGCTCGTAAATCGCCATTAAATAAACACACCGCATTGCTCTCCCTTTGCTTTGTTTTCTGGGGTAGACTCGCCACACAGACTGCGCCACGCGGcga                  >  2:691762/1‑147 (MQ=255)                                                                                                                                   aGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGgt              >  2:450753/1‑149 (MQ=255)                                                                                                                                   aGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGgt              <  2:281298/149‑1 (MQ=255)                                                                                                                                      ccTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCGGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGggtg           >  1:436040/1‑149 (MQ=255)                                                                                                                                       cTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTgg          >  1:575878/1‑149 (MQ=255)                                                                                                                                        tCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAGACACAACGCATTGATCTGACTTTGATTTGTTTTCTAGAGCAGACTCGCAAAGTAGAATGCGCAAAGCGGCAACGGTGTGga         >  2:195797/1‑149 (MQ=255)                                                                                                                                           cTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCCGCCCTGCCATCGTCAGTCCCCATTAAATAAACACACCGCCTTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGaa      <  2:665326/149‑1 (MQ=255)                                                                                                                                               tgTGGGGGCTTTACCGTTATCGCCCCATGCTGCCCTGCCATCGTAATTCCCCCTTAAATAAACACAACGCATTGCTCTGACTTTGATTTATTTTCCGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGa  <  2:392947/148‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                   ACCTAATTTAGTGAGTAAGGGTAAGGGAGGATTGCTCCTCCCCTGAGACTGACTGTTAATAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCGCATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAACACAACGCATTGATCTGACTTTGATTTATTTTCTGGAGCAGACTCGCAAAGTAGAATGCGCAACGCGGCAACGGTGTGGAGAAGGGA  >  NC_000913_3_pae_tpiA/3056835‑3057125

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.