New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	758482 =	40 (1.440)	4 (0.140)	4/268	3.6	9.1%	noncoding (74/118 nt)	RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site	RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
	?	NC_000913_3_pae_tpiA	= 2549563	NA (NA)					noncoding (98/98 nt)	RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAGGGGCTGAACCCGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAGGCCTGATAAGCGCAGCGCATCAGGCGTAACAAAGAAATGCAGGAAATCTTTAAAAACTGCCCCTGACACTAAGACAGTTTTTAAAGGTTCCTTCGCGAGCCACTACGTAGACAAGAGCTCGCAAGTGA  >  NC_000913_3_pae_tpiA/758340‑758629                                                                                                                                               |                                                                                                                                                    aaGGGGCTGAACCCGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAg                                                                                                                                               <  2:413016/149‑1 (MQ=255)   ggggCTGAACCCGACGCGCGCAATCGGCAATATAAAGACGATGTTGTTCCAACGCAATGCGGAAACCGTAGTCCTGATAATACGCGCTAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTc                                                                                                                                             >  2:103102/1‑149 (MQ=25)     ggCTGAACCCGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCAt                                                                                                                                           >  2:220026/1‑149 (MQ=255)        tGAACCCGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTAGGCGTAGAGAGCATAACCGAGAGGGCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATGAc                                                                                                                                        >  1:381482/1‑149 (MQ=21)            cccGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCCACCAGTCCCGGATGCGGCCTGCAAGACCTACCCCGCCTACAAGTCATTACCCGt                                                                                                                                    >  2:341948/1‑149 (MQ=38)              cGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAg                                                                                                                                  <  1:220026/149‑1 (MQ=255)                    gcgcCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAGGCCTGa                                                                                                                            <  2:288458/149‑1 (MQ=255)                          tCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAGGCCTGATAggcg                                                                                                                      >  1:205144/1‑149 (MQ=255)                                 tatCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAGGCCTGATAAgcgcagcgca                                                                                                               >  2:13095/1‑149 (MQ=255)                                 tatCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAGGCCTGATAAgcgcagcgca                                                                                                               >  2:13078/1‑149 (MQ=255)                                   tCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAGGCCTGATAAGCGCAGCGCATc                                                                                                             <  1:387227/149‑1 (MQ=255)                                     aaGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAGGCCTGATAAGCGCAGCGCATCAg                                                                                                           <  1:412153/149‑1 (MQ=255)                                       gTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAGGCCTGATAAGCGCAGCGCATCAGGc                                                                                                         >  2:38880/1‑149 (MQ=255)                                              ttgttgCAACGTAATGCGTAAACCGTAGGAATGATAAGACGCGCAAGCGTCGCATCAGGCAAACAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTCCCCGTCGGCATGATAAACGCATCGCATCAGGTGTAACaa                                                                                                  >  2:403569/1‑149 (MQ=37)                                                       cGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCTACCCACAACGCAGCCATTTCTGGATGCGGCGTGAACGCCTTCTCCCGCCTACAAGTCATTACCCGTGAGCCTGATAAGCGCAACGCATCAGTCGTAATCACGAAATACa                                                                                         >  2:86018/1‑149 (MQ=255)                                                        gTAATGAGTAAACCGTAGGCATGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCTGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAGGCCTGATAAGCGCAGCGCATCAGGCGTAACAAAGAAATGCAg                                                                                        <  1:38406/149‑1 (MQ=255)                                                               gTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAGGCCTGATAAGCGCAGCGCATCAGGCGTAACAAAGAAATGCAGGAAATCt                                                                                 <  2:313464/149‑1 (MQ=255)                                                                 aaaCCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCATATCCGGCCTACAAGTCATTACCCGTAGGCCTGAGAAGCGCAGCGCATCAGGCGTAACAAAGAAATGCAGGAAATCttt                                                                               >  1:391946/1‑149 (MQ=255)                                                                      gTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAGGCCTGATAAGCGCAGCGCATCAGGCGTAACAAAGAAATGCAGGAAATCTTTaaaaa                                                                          <  1:38880/149‑1 (MQ=255)                                                                            cTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAGGCCTGATAAGCGCAGCGCATCAGGCGTAACAAAGAAATGCAGGAAATCTTTAAAAACTcccc                                                                    >  2:15821/1‑149 (MQ=255)                                                                            cTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAGGCCTGATAAGCGCAGCGCATCAGGCGTAACAAAGAAATGCAGGAAATCTTTAAAAACTGccc                                                                    >  2:316122/1‑149 (MQ=255)                                                                            cTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAGGCCTGATAAGCGCAGCGCATCAGGCGTAACAAAGAAATGCAGGAAATCTTTAAAAACTGccc                                                                    >  1:26002/1‑149 (MQ=255)                                                                            cTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAGGCCTGATAAGCGCAGCGCATCAGGCGTAACAAAGAAATGCAGGAAATCTTTAAAAACTGccc                                                                    <  1:13095/149‑1 (MQ=255)                                                                            cTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAGGCCTGATAAGCGCAGCGCATCAGGCGTAACAAAGAAATGCAGGAAATCTTTAAAAACTGccc                                                                    <  1:13078/149‑1 (MQ=255)                                                                                tAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAGGCCTGATAAGCGCAGCGCATCAGGCGTAACAAAGAAATGCAGGAAATCTTTAAAAACTGCCCCTGa                                                                <  1:316122/149‑1 (MQ=255)                                                                                    aCGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGGTGCGGCGTGAACGCCTTATCCGGCCTAAAAGGCATAACCCGTAGGCGTGATAAGCGCAGCGCATCAGGCGTAACAAAGAAATGCAGGAAATCTTTAAAAACTGCCCCTGACACt                                                            >  1:357316/1‑149 (MQ=39)                                                                                      gcgcAAGTGTCGCATCAGGCAACCTGGGCCGGATGACGCTTGAACGCCGTTACCGGCCTACAAGTCGTTACCCGTAGGCCTGATAAGCGCAGCGCATCAGGCGTAACACAGAAGTTCGTGAAATCTTTAAAAACTGCCCCTGACACTaa                                                          <  2:419748/149‑1 (MQ=255)                                                                                          aaGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTCCAAGTCATAGCCCCTAGGCCTGATAAGCGCAGCGCATCAGGCGTAACAAAGAAATGCAGGAAATCTTTAAAAACTGCCCCTGACACTAAGACa                                                      >  1:488662/1‑149 (MQ=255)                                                                                               tCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAGGCCTGATAAGCGCAGCGCATCAGGCGTAACAAAGAAATGCAGGAAATCTTTAAAAACTGCCCCTGACACTAAGACAGtttt                                                 >  1:407407/1‑149 (MQ=255)                                                                                                   aTCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAGGCCTGATAAGCGCAGCGCATCAGGCGTAACAAAGAAATGCAGGAAATCTTTAAAAACTGCCCCTGACACTAAGACAGTTTTTcaa                                             >  2:21552/1‑149 (MQ=255)                                                                                                    tCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAGGCCTGATAAGCGCAGCGCATCAGGCGTAACAAAGAAATCCAGGAAATCTTTAAAAACTGCCCCTGACACTAAGCCAGTTTTTAAAg                                            >  1:107097/1‑149 (MQ=255)                                                                                                        gCAACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAGGCCTGATAAGCGCAGCGCATCAGGCGTAACAAAGAAATGCAGGAAAACTTTAAAAACTGCCCCTGACACTAAGACAGTTTTTAAAGGTTc                                        <  1:103102/149‑1 (MQ=255)                                                                                                        gCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTAcc                                                                                                                                       >  2:212499/1‑54 (MQ=255)                                                                                                        gCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTAcc                                                                                                                                       <  1:212499/54‑1 (MQ=255)                                                                                                        gCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAGGCCTGATAAGCGCAGCGCATCAGGTGGAGCGATTAAATGCAGGAAATCTTTAAAAACTGCCCCTGACACTAAGACAGTTTTTAAAGGTTc                                        >  1:506181/1‑149 (MQ=38)                                                                                                         cAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAGGCCTGATAAGCGCAGCGCATCAGGCGTAACAAAGAAATGCAGGAAATCTTTAAAAACTGCCCCTGACACTAAGACAGTTTTTAAAGGTTcc                                       <  1:477417/149‑1 (MQ=255)                                                                                                                tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAGGCCTGATAAGCGCAGCGCATCAGGCGTAACAAAGAAATGCAGGAAATCTTTAAAAACTGCCCCTGACACTAAGACAGTTTTTAAAGGTTCCTTCGCGa                                <  1:408814/149‑1 (MQ=255)                                                                                                                   cGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAGGCCTGATAAGCGCAGCGCATCAGGCGTAACAAAGAAATGCAGGAAATCTTTAAAAACTGCCCCCGACACTAAGACAGTTTTTAAAGGTTCCTTCGCGAGcc                             >  1:400938/1‑149 (MQ=255)                                                                                                                   cGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAGGCCTGATAAGCGCAGCGCATCAGGCGTAACAAAGAAATGCAGGAAATCTTTAAAAACTGCCACTGGCTCTAAGACAGTTTTTAAAGGTTCCTTCGCGAGcc                             >  1:142935/1‑149 (MQ=255)                                                                                                                       tGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAGGCCTGATAAGCGCAGCGCATCAGGCGTAACAAAGAAATGCAGGAAATCTTTAAAAACTGCCCCTGACACTAAGACAGTTTTTAAAGGTTCCTTCGCGAGCCACTa                         <  2:480880/149‑1 (MQ=255)                                                                                                                                            ggCCTACAAGTCATTACCCGTAGGCCTGATAAGCGCAGCGCATCAGGCGTAACAAAGAAATGCAGGAAATCTTTAAAAACTGCCCCTGACACTAAGACAGTTTTTAAAGGTTCCTTCGCGAGCCACTACGTAGACAAGAGCTCGCAAGt    >  1:446934/1‑149 (MQ=255)                                                                                                                                              ccTACAAGTCATTACCCGTAGGCCTGATAAGCGCAGCGCATCAGGCGTAACAAAGAAATGCAGGAAATCTTTAAAAACTGCCCCTGACACTAAGACAGTTTTTAAAGGTTCCTTCGCGAGCCACTACGTAGACATGAGCACGCAAATGa  >  2:312796/1‑149 (MQ=255)                                                                                                                                              ccTACAAGTCATTACCCGTAGGCCTGATAAGCGCAGCGCATCAGGCGTAACAAAGAAATGCAGGAAATCTTTAAAAACTGCCCCTGACACTAAGACAGTTTTTAAAGGTTCCTTCGCGAGCCACTACGTAGACAAGAGCTCGCAAGTGa  <  2:505957/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                    AAGGGGCTGAACCCGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAGTCATTACCCGTAGGCCTGATAAGCGCAGCGCATCAGGCGTAACAAAGAAATGCAGGAAATCTTTAAAAACTGCCCCTGACACTAAGACAGTTTTTAAAGGTTCCTTCGCGAGCCACTACGTAGACAAGAGCTCGCAAGTGA  >  NC_000913_3_pae_tpiA/758340‑758629

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.